View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3817_low_1 (Length: 577)
Name: NF3817_low_1
Description: NF3817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3817_low_1 |
 | |
|
| [»] scaffold0300 (1 HSPs) |
| | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
| [»] scaffold0121 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Original strand, 46239951 - 46240520
Alignment:
| Q |
1 |
tggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46239951 |
tggaaagctaaacagatagctcagaaaattgttgagggtgatgctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtc |
46240050 |
T |
|
| Q |
101 |
ctggaaacagggtgagtatcactgttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtt |
200 |
Q |
| |
|
||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46240051 |
ctggaaatagtgtgagtatcaatgttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggttgcaaaaaagggtt |
46240150 |
T |
|
| Q |
201 |
tacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46240151 |
tacaaatggatgtaggccatttattggggttgatggttgtcatctaaagacaaagtatgggggtcaactgctcattgctgttggtagagacccaaatgac |
46240250 |
T |
|
| Q |
301 |
cagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240251 |
cagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaa |
46240350 |
T |
|
| Q |
401 |
gatatgtattcatatcagatcagcagaaggtaagtgatgtcagtctatttcatgtatttaattaatatatagatcatagattaatattgtaacattattg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240351 |
gatatgtattcatatcagatcagcagaaggtaaatgttgtcagtctatttcatgtatttaattaatatatagatcatagattaatattgtaacattattg |
46240450 |
T |
|
| Q |
501 |
ttgttgaatatttcagggactaatgagtgtgtttgaagagatgtttgagactgttgagcacaggttctgc |
570 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240451 |
gtgttgaatatttcagggactaatgagtgtgtttgaagagatgtttgagactgttgagcacaggttctgc |
46240520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 23541345 - 23541775
Alignment:
| Q |
1 |
tggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtc |
100 |
Q |
| |
|
||||| ||||||||||| ||||||| |||||||| |||||||||||| | ||||| | ||||| |||| |||||||| ||||||||||| ||| | |
|
|
| T |
23541345 |
tggaaggcaaaacagattgctcagagtattgttgatggtgatgctgataggcaatatgccatgatttggaggtatgctgcagaacttaaaagggtgaatg |
23541444 |
T |
|
| Q |
101 |
ctggaaacagggtgagtatcactgttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtt |
200 |
Q |
| |
|
||||||| | |||| || | ||| ||||| ||| ||| | | |||||||||||||| ||||| |||||||||||||||||||| || ||||| || |
|
|
| T |
23541445 |
ctggaaataatgtgaagataaatgtggatagaccaaccccatcaatccaacccaggtttggttctttctacttttgttttgatggctgtaagaaaggttt |
23541544 |
T |
|
| Q |
201 |
tacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgac |
300 |
Q |
| |
|
| ||||| ||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||||||||| || || | ||||||||| |||||||||||| |
|
|
| T |
23541545 |
catcaatgggtgtagaccatttgttggggtagatggatgtcatttaaagacaaagtatgggggtcaacttctaatagttgttggtagggacccaaatgac |
23541644 |
T |
|
| Q |
301 |
cagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaa |
400 |
Q |
| |
|
|| || ||||| | |||||||| || || ||||| |||| |||| ||||||||| |||||||||||| | | ||||||||||||| | |||| | |
|
|
| T |
23541645 |
caatattttccattggcatttggaatagtagaaacaaagtgtagggaaagctggaaatggttcatggagcttttaatggatgacattggaagggatagga |
23541744 |
T |
|
| Q |
401 |
gatatgtattcatatcagatcagcagaaggt |
431 |
Q |
| |
|
||||||| |||||||||||||| |||||||| |
|
|
| T |
23541745 |
gatatgtcttcatatcagatcaacagaaggt |
23541775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 154 - 432
Target Start/End: Complemental strand, 30038412 - 30038134
Alignment:
| Q |
154 |
aggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaa |
253 |
Q |
| |
|
|||||||| |||||||| || ||||||||||| || || |||||||| | | || || || || ||| |||| || |||||||| || | || |||| |
|
|
| T |
30038412 |
aggtttgggtctttttatttctgttttgatgggtgtaagaaagggttcatatctgcttgcagaccctttgttggagtggatggctgccacttgaaaacaa |
30038313 |
T |
|
| Q |
254 |
agtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctg |
353 |
Q |
| |
|
|| ||||||||||| | |||||||| || |||||||||||||||||||| ||||| || || ||||| | |||||||||||||||| || || || |
|
|
| T |
30038312 |
gatacgggggtcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaacttg |
30038213 |
T |
|
| Q |
354 |
gaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
432 |
Q |
| |
|
||| ||||||| | |||||||| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
30038212 |
gaaatggttcacgcagttgctgatggaagatataggtgaagataagagatatgtgttcatatcagatcaacaaaaggta |
30038134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 333
Target Start/End: Original strand, 34584674 - 34584859
Alignment:
| Q |
148 |
caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa |
247 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| || || ||| ||||||| ||||| ||||| || || || || || ||||| |||||| | | |
|
|
| T |
34584674 |
caacccagatttggatctttttatttttgctttgaaggttgtaaacaagggttcttgaatggttgtagacccttcataggtgtagatggatgtcatttga |
34584773 |
T |
|
| Q |
248 |
agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaa |
333 |
Q |
| |
|
| ||| | ||||| || ||||| || || ||||| || ||||| | |||||||| || | ||||||||| ||||| ||||||||| |
|
|
| T |
34584774 |
aaacacaatatggcgggcaacttctgatagctgtgggaagagatgctaatgaccaatattatcctcttgcttttggaattgttgaa |
34584859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 3437528 - 3437067
Alignment:
| Q |
1 |
tggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437528 |
tggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtc |
3437429 |
T |
|
| Q |
101 |
ctggaaacagggtgagtatcactgttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtt |
200 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3437428 |
ctggaaacagtgtgagtatcaatgttgataggccagatccaggattacaacccaggtttggatctttttacttttgttttgatggatgcaaaaaagggtt |
3437329 |
T |
|
| Q |
201 |
tacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3437328 |
tacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatggtggtcaactgctcattgctgttggtagagacccaaatgac |
3437229 |
T |
|
| Q |
301 |
cagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437228 |
cagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaa |
3437129 |
T |
|
| Q |
401 |
gatatgtattcatatcagatcagcagaaggtaagtgatgtcagtctatttcatgtatttaat |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3437128 |
gatatgtattcatatcagatcagcagaaggtaagtgttgtcagtctatttcatgtatttaat |
3437067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 335
Target Start/End: Complemental strand, 14799118 - 14798952
Alignment:
| Q |
169 |
tacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaac |
268 |
Q |
| |
|
||||| || |||||||| || ||||| || || || | || |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||| |
|
|
| T |
14799118 |
tacttctgctttgatggatgtaaaaagggattcactagtgcatgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaat |
14799019 |
T |
|
| Q |
269 |
tactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaac |
335 |
Q |
| |
|
| | | ||||| || ||||| |||||||| || ||||||||| | || ||||| |||||||||| |
|
|
| T |
14799018 |
tgttggtggctgtaggaagagatccaaatgatcaatactttcctttagcttttggtgttgttgaaac |
14798952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 335
Target Start/End: Complemental strand, 15246110 - 15245944
Alignment:
| Q |
169 |
tacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaac |
268 |
Q |
| |
|
||||| || |||||||| || ||||| || || || | || |||||| ||||||||||| |||||||| ||||| || |||||||| ||||| |||||| |
|
|
| T |
15246110 |
tacttctgctttgatggatgtaaaaagggattcactagtgcatgtagaccatttattggtgttgatgggtgtcacctgaagacaaaatatggaggtcaat |
15246011 |
T |
|
| Q |
269 |
tactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaac |
335 |
Q |
| |
|
| | | ||||| || ||||| |||||||| || ||||||||| | || ||||| |||||||||| |
|
|
| T |
15246010 |
tgttggtggctgtaggaagagatccaaatgatcaatactttcctttagcttttggtgttgttgaaac |
15245944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 148 - 432
Target Start/End: Original strand, 29878125 - 29878409
Alignment:
| Q |
148 |
caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa |
247 |
Q |
| |
|
||||| |||||||| |||||||| || ||||||||||| || || |||||||| | | || || || || ||| |||| || |||||||| || | | |
|
|
| T |
29878125 |
caaccaaggtttgggtctttttatttctgttttgatgggtgtaagaaagggttcatatctgcttgcagaccctttgttggagtggatggctgccacttga |
29878224 |
T |
|
| Q |
248 |
agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc |
347 |
Q |
| |
|
| |||| |||||||| ||||| | |||||||| || |||||||||||||||||||| ||||| || || ||||| | |||||||||||||||| || |
|
|
| T |
29878225 |
aaacaagatatggggggcaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaagga |
29878324 |
T |
|
| Q |
348 |
aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
432 |
Q |
| |
|
||| ||||| |||||||| |||||||| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
29878325 |
aagttggaaatggttcatacagttgctgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta |
29878409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 148 - 432
Target Start/End: Complemental strand, 3921483 - 3921199
Alignment:
| Q |
148 |
caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa |
247 |
Q |
| |
|
||||| |||||||| |||||||| || ||||||||||| || || |||||||| | | || || || || ||| |||| || |||||||| || | | |
|
|
| T |
3921483 |
caaccaaggtttgggtctttttatttctgttttgatgggtgtaagaaagggttcatatctgcttgcagaccctttgttggagtggatggctgccacttga |
3921384 |
T |
|
| Q |
248 |
agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc |
347 |
Q |
| |
|
| |||| || ||||| ||||| | |||||||| || |||||||||||||||||||| ||||| || || ||||| | |||||||||||||||| || |
|
|
| T |
3921383 |
aaacaagataagggggacaactgttgattgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaagga |
3921284 |
T |
|
| Q |
348 |
aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
432 |
Q |
| |
|
||| ||||| |||||||| |||||||| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
3921283 |
aagttggaaatggttcatacagttgctgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta |
3921199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 256 - 432
Target Start/End: Original strand, 6869027 - 6869201
Alignment:
| Q |
256 |
tatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctgga |
355 |
Q |
| |
|
|||||||| ||||| | |||||||| || |||||||||||||||||||||||||| || || ||||| | |||||||||||||||| || ||| |||| |
|
|
| T |
6869027 |
tatgggggccaactgttgattgctgtagggagagacccaaatgaccagtactttccactagcttttggggtagttgaaactgagtgcaaggaaagttgga |
6869126 |
T |
|
| Q |
356 |
agtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
432 |
Q |
| |
|
| ||||||||| |||||||| |||| || || || ||||| |||| |||| |||||||||||||| || |||||| |
|
|
| T |
6869127 |
aatggttcatgcagttgctgatggaagatataggtcaagat--aagagatgtgttcatatcagatcaacaaaaggta |
6869201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 148 - 432
Target Start/End: Complemental strand, 4497506 - 4497222
Alignment:
| Q |
148 |
caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa |
247 |
Q |
| |
|
||||| || ||||| ||||| ||||||| |||||||| ||||| | ||| || | | || |||||| || ||| | ||||||||||| || || | | |
|
|
| T |
4497506 |
caaccaagatttgggtctttctacttttcctttgatggatgcaagagaggattcaaagctgcatgtagaccttttgtgggggttgatgggtgccacttga |
4497407 |
T |
|
| Q |
248 |
agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc |
347 |
Q |
| |
|
|||| || ||||| || ||||| || | |||||||| || ||||| ||||||||||| ||||| || || ||||| |||||||| ||| | | ||| |
|
|
| T |
4497406 |
agactaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagttgaaagtaaggc |
4497307 |
T |
|
| Q |
348 |
aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
432 |
Q |
| |
|
||||||||| ||||| |||||| || || || ||||||| || || |||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
4497306 |
aagctggaaatggtttatggagctgttgatgaatgacataggaaatgataaaagatatgtcttcatatcagatcaacagaaggta |
4497222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 323
Target Start/End: Complemental strand, 11318469 - 11318291
Alignment:
| Q |
145 |
ttacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatc |
244 |
Q |
| |
|
||||| || ||||||||| ||||| |||| |||||||| ||||||||||| ||| | | |||||| || ||||| || |||||||| ||||||| |
|
|
| T |
11318469 |
ttacagcctaggtttggaagcttttatttttcatttgatggttgcaaaaaaggatttttgacagcatgtagaccttttatcggtgttgatggttgtcatc |
11318370 |
T |
|
| Q |
245 |
taaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg |
323 |
Q |
| |
|
||||||| | ||||| || ||||| || ||||| |||| |||||||||||||| || || |||||| | |||||||| |
|
|
| T |
11318369 |
taaagactagatatggaggacaacttcttattgcagttgcaagagacccaaatgatcaatattttcctttagcatttgg |
11318291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 148 - 432
Target Start/End: Original strand, 18005 - 18289
Alignment:
| Q |
148 |
caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa |
247 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| |||||||||||||| | |||||| | | || |||||| || ||| | ||||| ||||| || ||| | | |
|
|
| T |
18005 |
caacccagatttgggtctttctacttttcatttgatggctgcaagagagggttcaaagctgcatgtagaccctttgtgggggtagatgggtgccatttga |
18104 |
T |
|
| Q |
248 |
agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc |
347 |
Q |
| |
|
| || || ||||| || ||||| || | |||||||| || ||||| ||||||||||| ||||| || || ||||| |||||||| || | | ||| |
|
|
| T |
18105 |
aaaccaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttcccctggcctttggtgttgttgaagtagaaagtaaggc |
18204 |
T |
|
| Q |
348 |
aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
432 |
Q |
| |
|
||||||||| ||||| |||||| || || || ||||||| || || || ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
18205 |
aagctggaaatggtttatggagctgttgatgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta |
18289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 148 - 432
Target Start/End: Complemental strand, 24676326 - 24676042
Alignment:
| Q |
148 |
caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa |
247 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| |||||||||||||| | |||||| | | || |||||| || ||| | ||||| ||||| || ||| | | |
|
|
| T |
24676326 |
caacccagatttgggtctttctacttttcatttgatggctgcaagagagggttcaaagctgcatgtagaccctttgtgggggtagatgggtgccatttga |
24676227 |
T |
|
| Q |
248 |
agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggc |
347 |
Q |
| |
|
| || || ||||| || ||||| || | |||||||| || ||||| ||||||||||| ||||| || || ||||| |||||||| || | | ||| |
|
|
| T |
24676226 |
aaaccaaatatggtggacaacttctgctagctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagtagaaagtaaggc |
24676127 |
T |
|
| Q |
348 |
aagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
432 |
Q |
| |
|
||||||||| ||||| |||||| || || || ||||||| || || || ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
24676126 |
aagctggaaatggtttatggagctgttgatgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta |
24676042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 211 - 311
Target Start/End: Complemental strand, 40153 - 40053
Alignment:
| Q |
211 |
tgtaggccatttattggggttgatggctgtcatctaaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttc |
310 |
Q |
| |
|
|||||||| ||||| || |||||||| |||||||| ||||| |||||||| ||| || | |||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
40153 |
tgtaggccctttataggagttgatgggtgtcatcttaagaccaagtatggaggtactcttttaattgttgttggtagagacccaaatgaccagtattttc |
40054 |
T |
|
| Q |
311 |
c |
311 |
Q |
| |
|
| |
|
|
| T |
40053 |
c |
40053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 432
Target Start/End: Original strand, 36915336 - 36915439
Alignment:
| Q |
329 |
ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa |
428 |
Q |
| |
|
||||||||||||||| || ||| ||||| ||||||||| ||||||| |||| || || || ||||||| |||||||| |||||||||||||| || || |
|
|
| T |
36915336 |
ttgaaactgagtgcaaggaaagttggaaatggttcatgcagttgctaatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaa |
36915435 |
T |
|
| Q |
429 |
ggta |
432 |
Q |
| |
|
|||| |
|
|
| T |
36915436 |
ggta |
36915439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 333
Target Start/End: Original strand, 30964560 - 30964745
Alignment:
| Q |
148 |
caacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatctaa |
247 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| || || ||| ||||||| ||||| ||||| || || || || || ||||| |||||| | | |
|
|
| T |
30964560 |
caacccagatttggatctttttatttttgctttgaaggttgtaaacaagggttcttgaatggttgtagacccttcataggtgtagatggatgtcatttga |
30964659 |
T |
|
| Q |
248 |
agacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaa |
333 |
Q |
| |
|
| ||| | ||||| || ||||| || || ||||| || ||||| | |||||||| || | ||||||||| ||||| ||||||||| |
|
|
| T |
30964660 |
aaacacaatatggcgggcaacttctgatagctgtgggaagagatgctaatgaccaatattatcctcttgcttttggaattgttgaa |
30964745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 323
Target Start/End: Original strand, 43429 - 43607
Alignment:
| Q |
145 |
ttacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatc |
244 |
Q |
| |
|
||||| || ||||||||| ||||| |||| |||||||| ||||||||||| ||| | | |||||| || ||||| || |||||||| ||||||| |
|
|
| T |
43429 |
ttacagcctaggtttggaagcttttatttttcatttgatggttgcaaaaaaggatttttgacagcatgtagaccttttatcggtgttgatggttgtcatc |
43528 |
T |
|
| Q |
245 |
taaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg |
323 |
Q |
| |
|
||||||| | ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||||| | |||||||| |
|
|
| T |
43529 |
taaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatattttcctttagcatttgg |
43607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 323
Target Start/End: Complemental strand, 18131739 - 18131561
Alignment:
| Q |
145 |
ttacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaagggtttacaaatggatgtaggccatttattggggttgatggctgtcatc |
244 |
Q |
| |
|
||||| || ||||||||| ||||| |||| |||||||| ||||||||||| ||| | | |||||| || ||||| || |||||||| ||||||| |
|
|
| T |
18131739 |
ttacagcctaggtttggaagcttttatttttcatttgatggttgcaaaaaaggatttttgacagcatgtagaccttttatcggtgttgatggttgtcatc |
18131640 |
T |
|
| Q |
245 |
taaagacaaagtatgggggtcaactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttgg |
323 |
Q |
| |
|
||||||| | ||||| || ||||| || ||||| ||||| |||| ||||||||| || || |||||| | |||||||| |
|
|
| T |
18131639 |
taaagactagatatggaggacaacttcttattgcagttggaagaggcccaaatgatcaatattttcctttagcatttgg |
18131561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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