View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3817_low_2 (Length: 250)
Name: NF3817_low_2
Description: NF3817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3817_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 53121048 - 53121135
Alignment:
| Q |
11 |
ggtaagggtttgttttggggaaaagattggtaaacaccctttaaa-ggtgtacctcctatacacacgccgacatggcacatttctaat |
97 |
Q |
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| T |
53121048 |
ggtaagggtttgttttgggaaaaagatcggtaaacaccctttaaagggtgtacctcctatacacacgctgacatggcacatttctaat |
53121135 |
T |
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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 30951798 - 30951868
Alignment:
| Q |
28 |
gggaaaagattggtaaacaccctttaaa-ggtgtacctcctatacacacgccgacatggcacatttctaat |
97 |
Q |
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| T |
30951798 |
gggaaaagattggtaaacaccctttaaagggtgtacctcccatacacacgctgacatgacacatttctaat |
30951868 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 33806336 - 33806266
Alignment:
| Q |
28 |
gggaaaagattggtaaacaccctttaaagg-tgtacctcctatacacacgccgacatggcacatttctaat |
97 |
Q |
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| T |
33806336 |
gggaaaagattggtaaacaccctttaaaggatgcacgtcccatacacacgctgacatgacgcatttctaat |
33806266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 26467352 - 26467398
Alignment:
| Q |
28 |
gggaaaagattggtaaacaccctttaaa-ggtgtacctcctatacac |
73 |
Q |
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| T |
26467352 |
gggaaaagattggtaaacaccctttaaagggtgtacctcccatacac |
26467398 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 19192130 - 19192169
Alignment:
| Q |
28 |
gggaaaagattggtaaacaccctttaaa-ggtgtacctcc |
66 |
Q |
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| T |
19192130 |
gggaaaagattggtaaacaccctttaaagggtgtacctcc |
19192169 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 959456 - 959412
Alignment:
| Q |
44 |
acaccctttaaagg-tgtacctcctatacacacgccgacatggca |
87 |
Q |
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| T |
959456 |
acaccctttaaagggtgtaccttctatacacacgctgacatggca |
959412 |
T |
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