View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3818_high_10 (Length: 224)
Name: NF3818_high_10
Description: NF3818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3818_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 18444415 - 18444201
Alignment:
| Q |
1 |
tctccttgtctttgtattttgaaatgccgaggacggctttactagaacgtcgacatttttctgttgttgtaatagtatttttagactgtccaatatattt |
100 |
Q |
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| T |
18444415 |
tctccttgtctttgtattttgaaataccgaggatggctttactagaacctcgacatttttctgttgttgtaatagtatttttagactgtccaatatattt |
18444316 |
T |
|
| Q |
101 |
agggaatacgttgtttgtgtaacattgaatggctgtattttacattgtctcctaaacaatgaaacgcgttgaacatctcgttgaggcgggatacctttgt |
200 |
Q |
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| T |
18444315 |
agggaatacgttgtttgtgtaacattgaatggctgtattttacattgtctcctaaacgatgaaacacgttgaacatctcgttgaggcgggatacctttgt |
18444216 |
T |
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| Q |
201 |
gaatcatagtataat |
215 |
Q |
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| T |
18444215 |
gaatcatagtataat |
18444201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 33485836 - 33485737
Alignment:
| Q |
18 |
tttgaaatgccgaggacggctttactagaacgtcgacatttttctgttgttgtaatagtatttttagactgtccaatatatttagggaatacgttgtttg |
117 |
Q |
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| T |
33485836 |
tttgaaatgctgaggaagcctttactagaacctcgacatttttctgttgttgtaagtg---ttttagactgtccagtatattgcgggaataagttgtttg |
33485740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 33485699 - 33485619
Alignment:
| Q |
116 |
tgtgtaacattgaatggctgtattttacattgtctcctaaacaatgaaacgcgttgaacatctcgttgaggcgggatacct |
196 |
Q |
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| T |
33485699 |
tgtgtaacattgaatggttgtattttagattgtctcctaaaagatgagacacgttgaacatctatttgatgcaggatacct |
33485619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 55443658 - 55443557
Alignment:
| Q |
22 |
aaatgccgaggacggctttactagaacgtcgacatt-tttctgttgttgtaatagtatttttagactgtccaatatatttagggaatacgttgtttgtgt |
120 |
Q |
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|||||||||||||| |||||||||||| |||| ||| |||| |||||||||||| |||||||| ||||| |||||||||||| ||||||| ||| |
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| T |
55443658 |
aaatgccgaggacgcctttactagaacctcgaaattctttc---tgttgtaatagtgtttttagattgtcc----catttagggaataggttgtttttgt |
55443566 |
T |
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| Q |
121 |
aacattgaa |
129 |
Q |
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| T |
55443565 |
aacattgaa |
55443557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 55443533 - 55443434
Alignment:
| Q |
116 |
tgtgtaacattgaatggctgtattttacattgtctcctaaacaatgaaacgcgttgaacatctcgttgaggcgggatacctttgtgaatcatagtataat |
215 |
Q |
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| T |
55443533 |
tgtgtaacattgaatgattgtattttagattgtctcctaaaagatgagacacattgaacatctcattgatacatgattcctttgcgaatcaaagtataat |
55443434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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