View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3818_high_4 (Length: 411)
Name: NF3818_high_4
Description: NF3818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3818_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 401
Target Start/End: Complemental strand, 31904876 - 31904490
Alignment:
| Q |
16 |
cacaatttaccccaccggttattagttctaattttgtagtcagggtaatttatgggtaaggctactgaagctctcgacttaaacacatcaacaaaaaatt |
115 |
Q |
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| T |
31904876 |
cacaatttaccccaccggttattagttctaattttgtagtcagggtaatttatgggtaaggctactgaagctctcgccttaaatacatcaacaaaaaatt |
31904777 |
T |
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| Q |
116 |
ctttttcattaaatattataaacaaaaag-tcacataggaaggcaaaaaagaccccacacattaaaattttctttacaccttaattaatattgaaaacta |
214 |
Q |
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| T |
31904776 |
ctttttcattagatactataaacaaaaaggtcacatagaaaggcaaaaaagaccccacacattaaaatttgctttacaccttaattaatattgaaaacta |
31904677 |
T |
|
| Q |
215 |
ttgttccgatgctgtaataactaatatgtgacttaacatactcttctttcaaactgtacttcaaatctacaataaaattgctggctttatatatgttgga |
314 |
Q |
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| T |
31904676 |
ttgttccgacgctgtaataactaatatgtgacttaacatactcttctttcaaactgtacttcaaatctacaataaaattgctggctttatatatgttgga |
31904577 |
T |
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| Q |
315 |
ttttggagaattattttgtatccttttctaattgtatccttccccttttttattctaattgtatcctttcatcactttcatcctttg |
401 |
Q |
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| T |
31904576 |
ttttggagaattattttgtatccttttctaattgtatccttccccttttttattctaattgtatcctttcatcactttcatcctttg |
31904490 |
T |
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