View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3818_high_5 (Length: 381)
Name: NF3818_high_5
Description: NF3818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3818_high_5 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: scaffold0021 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 4 - 366
Target Start/End: Original strand, 153114 - 153476
Alignment:
| Q |
4 |
tcagacctcagtattttggagatcttataacctttgcatgcatgcagtgtcatgtttgaaagacttgccaaggatgggagggaatacaaagagaaaacct |
103 |
Q |
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| T |
153114 |
tcagacctcagtattttggagatcttataacctttgcatgcatgcagtgtcatgtttgaaagacttgccaaggatgggagggaacacaaagagaaaacct |
153213 |
T |
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| Q |
104 |
tggaagatgtgcatgaatatgccgacgaaggtttaaggaccctgatattggcatatcgtgaatttgacgaagtgcagtaccaggagtttgatagtgaatt |
203 |
Q |
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| T |
153214 |
tggaagatgtgcatgaatatgccgacgaaggtttaaggaccctgatattggcatatcgtgaacttgacgaagtgcagtaccaggagtttgatagtgaatt |
153313 |
T |
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| Q |
204 |
ttctcgagcaaaaaattcagttagcgcagatcgggaaacaatgatagatgaggcatcagatatgattgagagtaatctaatcctacttggtgccactgca |
303 |
Q |
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| T |
153314 |
ttctcgagcaaaaaattcagttagcgcagatcgggaaacaatgatagatgaggcatcagatatgattgagagtaatctaatccttcttggtgccactgca |
153413 |
T |
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| Q |
304 |
gtagaggacaagctccaaaatggggtgagtttagtttggagagaacggattacatgaaaggat |
366 |
Q |
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| T |
153414 |
gtagaggacaagctccaaaatggggtgagtttagtttggagagaacggattacatgaaaggat |
153476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 44 - 334
Target Start/End: Complemental strand, 29589397 - 29589107
Alignment:
| Q |
44 |
catgcagtgtcatgtttgaaagacttgccaaggatgggagggaatacaaagagaaaaccttggaagatgtgcatgaatatgccgacgaaggtttaaggac |
143 |
Q |
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| T |
29589397 |
catgcagtgtcatgtttgaaagacttgccaagaatggaagggagtttgaagagaaaaccatggaacatgtgcatgaatatgccgatgcaggtctaagaac |
29589298 |
T |
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| Q |
144 |
cctgatattggcatatcgtgaatttgacgaagtgcagtaccaggagtttgatagtgaattttctcgagcaaaaaattcagttagcgcagatcgggaaaca |
243 |
Q |
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||| ||| | || ||||||||| ||| | || | | ||| |||||||||||| ||| ||| || || |||| |||||| ||||||||||||||| |
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| T |
29589297 |
ccttatactcgcctatcgtgaacttgcagcagaggaatacaaggagtttgataacacattctctgaggccaagaatttagttagtgcagatcgggaaaca |
29589198 |
T |
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| Q |
244 |
atgatagatgaggcatcagatatgattgagagtaatctaatcctacttggtgccactgcagtagaggacaagctccaaaatggggtgagtt |
334 |
Q |
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| T |
29589197 |
ctgattgaggaagtatcggataatattgagaagaacctaatccttcttggtgctactgctgtagaggacaagctccaagatggggttagtt |
29589107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 329
Target Start/End: Original strand, 13708290 - 13708361
Alignment:
| Q |
258 |
atcagatatgattgagagtaatctaatcctacttggtgccactgcagtagaggacaagctccaaaatggggt |
329 |
Q |
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| T |
13708290 |
atcagaaaagattgagaggaatctaatcgttctcggtgccactgctgtagaagacaagctccaaaatggggt |
13708361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 13708078 - 13708207
Alignment:
| Q |
46 |
tgcagtgtcatgtttgaaagacttgccaaggatgggagggaatacaaagagaaaaccttggaagatgtgcatgaatatgccgacgaaggtttaaggaccc |
145 |
Q |
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| T |
13708078 |
tgcagtgtcatgtttgaaaggcttgccattaatggaagggagtttgaagaaaaaactttggaacatgtgagtgaatatgctgatgcaggtctaagaacac |
13708177 |
T |
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| Q |
146 |
tgatattggcatatcgtgaatttgacgaag |
175 |
Q |
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| T |
13708178 |
tgatacttgcctatcgtgaacttgatgaag |
13708207 |
T |
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