View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3818_low_2 (Length: 522)
Name: NF3818_low_2
Description: NF3818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3818_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 253 - 512
Target Start/End: Original strand, 47950096 - 47950363
Alignment:
| Q |
253 |
aatatctctgtttccatagtttgactt-----aataaccaaaacattaatatgtattcctctaacaacaagtcattagaaatccaaacatgatatttgtc |
347 |
Q |
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| T |
47950096 |
aatatctctgtttccatagtttgacttgacttaataaccaaaacattaatatgtattcctctaacaacaagtcattagaaatccaaacatgatatttgtc |
47950195 |
T |
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| Q |
348 |
tcacttctgatcatagttat---ctgcaattttgacagtatcaagtgctatatattttcccctcttgataggtcttgttgttcatttcacaataattttt |
444 |
Q |
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| T |
47950196 |
tcacttctgatcgtagttattatctgcaattttgacagtatcaagtgctatatattttcccctcttgataggtcttgtagttcatttcacaataattttt |
47950295 |
T |
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| Q |
445 |
tacgtttctgtacaaccttggatatgtctcgtttattaggtcttcaaccggtccaatttcgttctctg |
512 |
Q |
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| T |
47950296 |
tacgtttctgtacaaccttggatatgtctcgtttattaggtcttcaaccggtccaatttcgttctctg |
47950363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 47949968 - 47950058
Alignment:
| Q |
168 |
ttgagatgatcctgacccaaacttagggcaaaaaacttacaacaaaggtaagcctgccattattcataagtgtaatacacacataaatatc |
258 |
Q |
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| T |
47949968 |
ttgagaggatcctgacccaaacttagggcaaaaaacttacaacaaaggtaagcctgccattattcataagtgtaatacacacataaatatc |
47950058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 47949887 - 47949971
Alignment:
| Q |
18 |
cttattgtgtgagtattagaggatccaagtctgtcaccccagcgtaattttagtcgttatttaaaaattaaatctgaactgttga |
102 |
Q |
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| T |
47949887 |
cttattgtgtgagtattagaggatccaagtctgtcaccccagcgtaattttagtcgttttttaaaaattaaatctgagctgttga |
47949971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 508
Target Start/End: Original strand, 47957569 - 47957712
Alignment:
| Q |
361 |
tagttatctgcaattttgacagtatcaagtgctatatattttcccctcttgataggtcttgttgttcatttcacaataattttttacgtttctgtacaac |
460 |
Q |
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| T |
47957569 |
tagttatctgtcattttgacagtatcaagtgc----aattttcccctcttgatagcacctatagttaatatcaccataatttttgacatttttatacacc |
47957664 |
T |
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| Q |
461 |
cttggatatgtctcgtttattaggtcttcaaccggtccaatttcgttc |
508 |
Q |
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| T |
47957665 |
cttggacgtttctcatttaccagtccttcaacaggtccaatttcgttc |
47957712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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