View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3818_low_6 (Length: 374)
Name: NF3818_low_6
Description: NF3818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3818_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 364
Target Start/End: Original strand, 1259930 - 1260272
Alignment:
| Q |
20 |
cattgcgccatatcttaagggtgtatttctagacggattttacagtgcagtaaaactccagtacatttgtagcttagttgttttattataaaggatgttg |
119 |
Q |
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| T |
1259930 |
cattgtgccatatcttaaaggtgtatttttagacggattttagagtgcagtaaaactccagtacacttctagcttagttgttttattataa-ggatgttg |
1260028 |
T |
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| Q |
120 |
tgattgataatttgcatgcataatttctaaacaatgtcattaaacaccttaaaaagagcgatataatccaaaagtcttccaataattcctttggagatcg |
219 |
Q |
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| T |
1260029 |
tgattgataatttgcatgcataatttctaaacaatgtcattaaataccttaaaaagagcgatataatccaaaagtcttccaataatttctttggagatcg |
1260128 |
T |
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| Q |
220 |
aaaaaatatcttaaacgatttaaattacatttgaatggacagtaaccaaaacaatgaacactagattgacatagaatgaatgtagtgtatgaggctatta |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1260129 |
aaaaaatatcttaaacgatttaaattacatttgaatggacagtaacc-aaacaatgaacactagattgacatagaatgaatgtagtgtatgaggctatta |
1260227 |
T |
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| Q |
320 |
ttcaattaattttnnnnnnntaaaataattttgaaaggagtataa |
364 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |
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| T |
1260228 |
ttcaattaatttttaaaaaataaaataattttgaaaggagtataa |
1260272 |
T |
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