View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3818_low_7 (Length: 348)
Name: NF3818_low_7
Description: NF3818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3818_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 330
Target Start/End: Complemental strand, 47295102 - 47294786
Alignment:
| Q |
15 |
cacagagcagttgaagatcattccgatcaataggataccttgcattgttagtatgtaggagttgcacgtggcattccagcaaaactgtaagatataactg |
114 |
Q |
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| T |
47295102 |
cacaaagcagttgaagatcattcctatcaataggataccctgcattgttagtatgtaggagttgcacgtggcattccagcaaaactgtaagatataactg |
47295003 |
T |
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| Q |
115 |
gtatgtttacctgaggaatccatttcct-gtcaggataaattttgccgaacacctactggtaacacagctccaatcaagaatagccatacaaggtttcaa |
213 |
Q |
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| T |
47295002 |
gtatgtttacctgaggaatccatttcctagtcaggataaattttgccgaacacctactggtaacacagctccaatcaagaatagccatacaaggtttcaa |
47294903 |
T |
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| Q |
214 |
tacaatccaccgggtccaaatagccgcctcagcccaatcgaacaccaaataacagatgcatcaaatgtcactctgtatttggggcaagtacaagggactg |
313 |
Q |
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| T |
47294902 |
tacaatccaccgggtccaaatagccgcctcagcccaatcgaacaccaaataacagatgcatcaaatgtcactctgtatttggggcaagtacaagggactg |
47294803 |
T |
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| Q |
314 |
tcgtggcgagctttatc |
330 |
Q |
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| T |
47294802 |
tcgtggcgagctttatc |
47294786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 72 - 330
Target Start/End: Complemental strand, 56046841 - 56046576
Alignment:
| Q |
72 |
ggagttgcacgtggcattccagcaaaactgtaagatataactggtatgtttacctgaggaatccatttcctgtcaggataaattttgccgaacaccta-- |
169 |
Q |
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| T |
56046841 |
ggagttgcaggtggcattccagcaaaaccataagatataactggtatgtttatcagaggaatccatttcttgttagggtagattttgctaaacacccaaa |
56046742 |
T |
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| Q |
170 |
------ctggtaacacagctccaatcaagaatagccatacaaggtttcaatacaatccaccgggtccaaatagccgcctcagcccaatcgaacaccaaat |
263 |
Q |
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| T |
56046741 |
caggaactggcaacactgctccaaccaagaatagccatacaaggtttcggtacaatccacctggtccgaatagccgcttcggtccgattaacccccatat |
56046642 |
T |
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| Q |
264 |
aacagatgcatcaaatgtcactctgtatttggggcaagtacaagggactgtcgtggcgagctttatc |
330 |
Q |
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| T |
56046641 |
aacagatgcatcaaatgtcactcggtatttgggacaagtccaa-ggactatcatggtgagctttatc |
56046576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 69 - 331
Target Start/End: Complemental strand, 55708152 - 55707880
Alignment:
| Q |
69 |
gtaggagttgcacgtggcattccagcaaaactgtaagatataactggtatgtttacctgaggaatccatttcctgtcaggataaattttgccgaacacct |
168 |
Q |
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| T |
55708152 |
gtaggagttgcaggtggcattccagcaaaaccataagatataactggtatgtttatcagagaaaagcatttcttgtcagcatatattttgctgaatgcct |
55708053 |
T |
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| Q |
169 |
a--------ctggtaacacagctccaatcaagaatagccatacaaggtttcaatacaatccaccgggtccaaat---agccgcctcagcccaatcgaaca |
257 |
Q |
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| T |
55708052 |
aaacaagaactggtaacacagccccaataaagaataaccatacaaggtttcgatacaatccaccgggtccaaattatagccgccttggtcaaatcaaact |
55707953 |
T |
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| Q |
258 |
ccaaataacagatgcatcaaatgtcactctgtatttggggcaagtacaagggactgtcgtggcgagctttatct |
331 |
Q |
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| T |
55707952 |
gcatataaaagatgcatcaaatgccactctgtatttgggacaagt-cgaaggactgtcatggtaagctttatct |
55707880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 35802451 - 35802497
Alignment:
| Q |
69 |
gtaggagttgcacgtggcattccagcaaaactgtaagatataactgg |
115 |
Q |
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| T |
35802451 |
gtaggagttgcaggtggcattccagcaaaaccataagatataactgg |
35802497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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