View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3818_low_8 (Length: 302)
Name: NF3818_low_8
Description: NF3818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3818_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 31 - 286
Target Start/End: Original strand, 23575215 - 23575463
Alignment:
| Q |
31 |
ggtgtcggtctctaccatatattattgggtattatatatttgatcctaacaaatttgaaagtcaaagccaccttattagtactatatggtataattcaaa |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23575215 |
ggtgtcggtctctaccatatattattgggtattatatatttgatcctaacaaatttgaaagtcaaagccaccttattagtactatatggtataattcaaa |
23575314 |
T |
|
| Q |
131 |
tataaatatggcttgctctctcctctattttgcattccacaattcaagtgttcgttataaattaagcatagaaagaaactcatagatacttatacaaaat |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23575315 |
tataaatatggcttgctctctcctctattttgcattccacaattcaagtgttcgttataaattaagcatagaaagaaactcatagatacttatacaaga- |
23575413 |
T |
|
| Q |
231 |
catcattcatcaatggctgtcaaagtttatattgtgtatgcaattttatatctttt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23575414 |
------tcatcaatggctgtcaaagtttatattgtgtatgtaattttatatctttt |
23575463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University