View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3819_high_1 (Length: 478)
Name: NF3819_high_1
Description: NF3819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3819_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 226 - 460
Target Start/End: Complemental strand, 43893545 - 43893311
Alignment:
| Q |
226 |
aaaactctttagttataactttttaattctatcaattataattaatagtataattattgttttgcagtggacagtgttaacatggacagatgaagaattc |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43893545 |
aaaactctttagttataactttttaattctatcaattataattaatagtataattattgttttgcagtggacagtgttaacatggacagatgaagaattc |
43893446 |
T |
|
| Q |
326 |
aagaaggccttgcaaagttgttacaaggctcttccggtggctggaaaattgattctttgtgaaccggtgttaccggagcagaccgatgagagtaaaagaa |
425 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43893445 |
aagaaggccttgcaaagttgttacaaggctcttccggtggccggaaaattgattctttgtgaaccggtgttaccggagcagaccgatgagagtaaaagaa |
43893346 |
T |
|
| Q |
426 |
caagagcattgttggcagctgacatatggataatg |
460 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
43893345 |
caagagcattgttggcagctgacatatggataatg |
43893311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 43894526 - 43894311
Alignment:
| Q |
11 |
cacagaccaaatatcagacaaggaaaaatggtggcatgttaactcgtattcccaaatcaagttagagactggaacgagttggggctcgaattagttacaa |
110 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||| |
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| T |
43894526 |
cacaaaccaaaaatcagacaaggaaaaatggtggcatgttaactcgtattcccaaatcaagttagagactgttacgagttagggctcgaactagtttcaa |
43894427 |
T |
|
| Q |
111 |
caaaccaaaccataatgacacagaagcaacaacaactaaggtcgaattcactgttacaaaccaacaaattaaagataccaatgaagagcaaccccaaatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43894426 |
caaaccaaaccataatgacacagaagcaacaacaactaagatcgaattcactgttacaaaccaacaaattaaagattccaatgaagagcaaccccaaatt |
43894327 |
T |
|
| Q |
211 |
agaatagtgtcgaaca |
226 |
Q |
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|||||||||||||||| |
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| T |
43894326 |
agaatagtgtcgaaca |
43894311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 238 - 452
Target Start/End: Complemental strand, 43904126 - 43903911
Alignment:
| Q |
238 |
ttataactttttaattctatcaattataattaatagtataattattg-ttttgcagtggacagtgttaacatggacagatgaagaattcaagaaggcctt |
336 |
Q |
| |
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|||||| |||||||||||||| ||| | ||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| ||| |
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| T |
43904126 |
ttataattttttaattctatcgattctcatttattgtataattatttattttgcagtggacaatgttaacatggacagatgaagaatgcaagaaggtctt |
43904027 |
T |
|
| Q |
337 |
gcaaagttgttacaaggctcttccggtggctggaaaattgattctttgtgaaccggtgttaccggagcagaccgatgagagtaaaagaacaagagcattg |
436 |
Q |
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||| | || |||||||||||||||||| |||||||||||| ||||||| || |||| |||||||| ||||||||||||| ||||||||||||||||| |
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| T |
43904026 |
gcagaactgctacaaggctcttccggtgaacggaaaattgattgtttgtgagccagtgtcaccggagctgaccgatgagagtcaaagaacaagagcattg |
43903927 |
T |
|
| Q |
437 |
ttggcagctgacatat |
452 |
Q |
| |
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||| | | |||||||| |
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| T |
43903926 |
ttgtcgggtgacatat |
43903911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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