View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3819_low_4 (Length: 314)

Name: NF3819_low_4
Description: NF3819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3819_low_4
NF3819_low_4
[»] chr7 (7 HSPs)
chr7 (166-241)||(45550997-45551072)
chr7 (166-241)||(45551799-45551874)
chr7 (177-241)||(5995252-5995316)
chr7 (180-241)||(41970887-41970948)
chr7 (180-241)||(5997619-5997680)
chr7 (182-232)||(28778109-28778159)
chr7 (180-242)||(27268250-27268312)
[»] chr6 (7 HSPs)
chr6 (180-241)||(19237611-19237672)
chr6 (168-240)||(8683853-8683924)
chr6 (180-240)||(17280707-17280767)
chr6 (168-241)||(5860549-5860622)
chr6 (168-206)||(25359533-25359571)
chr6 (180-241)||(10793587-10793648)
chr6 (177-241)||(10792482-10792546)
[»] chr8 (7 HSPs)
chr8 (177-241)||(30972011-30972075)
chr8 (180-241)||(16106032-16106093)
chr8 (180-241)||(16113272-16113333)
chr8 (180-240)||(30971285-30971345)
chr8 (164-241)||(5152445-5152522)
chr8 (180-241)||(16101522-16101583)
chr8 (180-220)||(32744030-32744070)
[»] chr5 (2 HSPs)
chr5 (177-241)||(33471164-33471228)
chr5 (180-241)||(22671606-22671666)
[»] chr3 (8 HSPs)
chr3 (165-241)||(40929850-40929926)
chr3 (180-241)||(4300932-4300993)
chr3 (180-241)||(27359843-27359904)
chr3 (177-241)||(54285820-54285884)
chr3 (178-241)||(27317481-27317544)
chr3 (174-241)||(28422847-28422914)
chr3 (180-238)||(17619152-17619210)
chr3 (182-240)||(51341874-51341932)
[»] chr2 (7 HSPs)
chr2 (180-240)||(5483922-5483982)
chr2 (180-241)||(18767577-18767638)
chr2 (180-242)||(16591534-16591596)
chr2 (180-232)||(9244252-9244304)
chr2 (168-203)||(32666348-32666383)
chr2 (194-241)||(39240876-39240923)
chr2 (182-235)||(29558157-29558209)
[»] chr4 (18 HSPs)
chr4 (180-242)||(31135168-31135230)
chr4 (184-241)||(23088275-23088332)
chr4 (180-241)||(23089278-23089339)
chr4 (180-241)||(31914522-31914583)
chr4 (180-242)||(20627525-20627587)
chr4 (178-240)||(48315191-48315253)
chr4 (180-241)||(34837979-34838040)
chr4 (180-240)||(31689177-31689237)
chr4 (168-232)||(48314375-48314439)
chr4 (269-307)||(38961542-38961580)
chr4 (97-143)||(38961668-38961713)
chr4 (180-241)||(12206763-12206824)
chr4 (180-241)||(12210926-12210987)
chr4 (180-232)||(34978352-34978404)
chr4 (166-228)||(42523214-42523276)
chr4 (180-241)||(31135906-31135967)
chr4 (39-72)||(38961736-38961769)
chr4 (180-232)||(20628346-20628398)
[»] chr1 (9 HSPs)
chr1 (168-241)||(17239402-17239475)
chr1 (180-241)||(42026895-42026956)
chr1 (180-241)||(42031701-42031762)
chr1 (166-241)||(17238596-17238671)
chr1 (194-241)||(16801972-16802019)
chr1 (194-240)||(16802704-16802750)
chr1 (180-241)||(34267975-34268036)
chr1 (177-241)||(34269089-34269153)
chr1 (177-241)||(34275324-34275388)
[»] scaffold0112 (1 HSPs)
scaffold0112 (168-240)||(24728-24800)
[»] scaffold0015 (1 HSPs)
scaffold0015 (194-241)||(45332-45379)


Alignment Details
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 45551072 - 45550997
Alignment:
Q  166 tcttttggtcaaaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||||| |||||||||||||||||||||||||||||||||| ||| |||||| || ||||||||||| ||||||||    
T  45551072 tctttttgtcaaaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctattgtagcaaac 45550997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 45551799 - 45551874
Alignment:
Q  166 tcttttggtcaaaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||||| |||||||||||||||||||||||||||||||||| ||| |||||| || ||||||||||| ||||||||    
T  45551799 tctttttgtcaaaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctattgtagcaaac 45551874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 5995316 - 5995252
Alignment:
Q  177 aaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  5995316 aaatgaaaaggtgttggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaac 5995252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 41970948 - 41970887
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  41970948 tgaaaaggtgttggttgctaaaatagatcttcatgaaaatgagtgggtctattgtagcaaac 41970887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 5997619 - 5997680
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||||||||| |||||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  5997619 tgaaaaggtgctggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaac 5997680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 28778109 - 28778159
Alignment:
Q  182 aaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctatt 232  Q
    ||||||||||||| ||||||||||| ||| ||||||||| |||||||||||    
T  28778109 aaaaggtgttggtcgctaaaatagaccttgatgaaaatgagtgggtctatt 28778159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 27268250 - 27268312
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaact 242  Q
    |||||||||| || ||||||||||||| ||| ||||||||| |||| |||||| || ||||||    
T  27268250 tgaaaaggtgctgattgctaaaatagaccttcatgaaaatgagtggatctattgtatcaaact 27268312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 19237611 - 19237672
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  19237611 tgaaaaggtgttggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaac 19237672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 8683853 - 8683924
Alignment:
Q  168 ttttggtcaaaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaa 240  Q
    |||||||| |||| ||||| ||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||    
T  8683853 ttttggtccaaat-aaaagatgttggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 8683924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 17280707 - 17280767
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaa 240  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||||||| ||| |||||||    
T  17280707 tgaaaaggtgttggttgctaaaatagaccttaatgaaaatgagtgggtcaattgtagcaaa 17280767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 5860622 - 5860549
Alignment:
Q  168 ttttggtcaaaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||| ||| ||||||||| ||||| |||||||||||| | ||| || |||||| ||||||||||| ||||||||    
T  5860622 tttttgtccaaatgaaaatgtgtttgttgctaaaatacaccttcataaaaatgagtgggtctattgtagcaaac 5860549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 25359571 - 25359533
Alignment:
Q  168 ttttggtcaaaatgaaaaggtgttggttgctaaaataga 206  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  25359571 ttttggtccaaataaaaaggtgttggttgctaaaataga 25359533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 10793587 - 10793648
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||||| ||||||||||||| ||| || |||  | ||||||||||| ||||||||    
T  10793587 tgaaaaggtgttgcttgctaaaatagaccttgataaaatggagtgggtctattgtagcaaac 10793648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 10792546 - 10792482
Alignment:
Q  177 aaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||||||||||||||| ||||||||||||| ||| || |||  |  |||||||||| ||||||||    
T  10792546 aaatgaaaaggtgttgcttgctaaaatagaccttcataaaatggaatgggtctattgtagcaaac 10792482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 30972011 - 30972075
Alignment:
Q  177 aaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||||||||||||||||||||||||||||| ||| |||||| || ||||||||||| ||||||||    
T  30972011 aaatgaaaaggtgttggttgctaaaatagaccttcatgaaattgagtgggtctattgtagcaaac 30972075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 16106032 - 16106093
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||  ||||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  16106032 tgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaac 16106093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 16113272 - 16113333
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||  ||||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  16113272 tgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaac 16113333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 30971345 - 30971285
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaa 240  Q
    |||||| ||| |||||||||||||||| ||| ||||||||| ||||||||||| |||||||    
T  30971345 tgaaaaagtgatggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 30971285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 5152445 - 5152522
Alignment:
Q  164 gatcttttggtcaaaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||||||||||| |||||||||||||    ||||||||||||| ||| || |||||| | ||||||||| ||||||||    
T  5152445 gatcttttggtccaaatgaaaaggtgccacttgctaaaatagaccttcataaaaatgagcgggtctattgtagcaaac 5152522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 16101583 - 16101522
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||  ||||||||||||||| ||| ||||||||| ||| ||||||| ||||||||    
T  16101583 tgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgtgtctattgtagcaaac 16101522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 32744070 - 32744030
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatg 220  Q
    ||||||||||||||||||||||||||| ||| || ||||||    
T  32744070 tgaaaaggtgttggttgctaaaatagaccttcataaaaatg 32744030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 33471228 - 33471164
Alignment:
Q  177 aaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||||||||||||||||||||||||||||| ||| |||||||||  |||||||||| ||||||||    
T  33471228 aaatgaaaaggtgttggttgctaaaatagaccttcatgaaaatgaatgggtctattgtagcaaac 33471164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 22671666 - 22671606
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||||||||| ||||||||| ||| ||||||||| ||||||| ||| ||||||||    
T  22671666 tgaaaaggtgttggttgttaaaatagaccttcatgaaaatgagtgggtc-attgtagcaaac 22671606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 40929850 - 40929926
Alignment:
Q  165 atcttttggtcaaaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||| ||| |||||||||||||||||||||||||||| | ||| || |||||| ||||||||||| ||||||||    
T  40929850 atcttttcgtccaaatgaaaaggtgttggttgctaaaataaaccttcataaaaatgagtgggtctattgtagcaaac 40929926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 4300993 - 4300932
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||||||||||||||||||| ||| ||||||||  ||||||||||| ||||||||    
T  4300993 tgaaaaggtgttggttgctaaaatagatcttcatgaaaataagtgggtctattgtagcaaac 4300932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 27359843 - 27359904
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||||| ||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  27359843 tgaaaaggtgttgtttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaac 27359904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 54285820 - 54285884
Alignment:
Q  177 aaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||||||||||||| ||||||||||||||| ||| || |||||| ||||||||||| ||||||||    
T  54285820 aaatgaaaaggtgtaggttgctaaaatagaccttcataaaaatgagtgggtctattgtagcaaac 54285884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 27317481 - 27317544
Alignment:
Q  178 aatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||||||| ||||||||||| | ||| ||||||||| | ||||||||| ||||||||    
T  27317481 aatgaaaaggtgttgcttgctaaaataaaccttcatgaaaatgagcgggtctattgtagcaaac 27317544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 28422847 - 28422914
Alignment:
Q  174 tcaaaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||| |||||||||| ||||||||||||||||  || || |||||| ||||||||||| ||||||||    
T  28422847 tcaaagtgaaaaggtgatggttgctaaaatagactttcataaaaatgagtgggtctattgtagcaaac 28422914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 17619152 - 17619210
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagca 238  Q
    |||||||||  |||||||||||||||| ||| ||||||||| ||||||||||| |||||    
T  17619152 tgaaaaggtactggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagca 17619210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 51341932 - 51341874
Alignment:
Q  182 aaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaa 240  Q
    ||||||||||||||| ||||||||| ||| |||| |||| || |||||||| |||||||    
T  51341932 aaaaggtgttggttgttaaaatagaccttcatgagaatgagtaggtctattgtagcaaa 51341874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 5483922 - 5483982
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaa 240  Q
    |||||||||||||| |||||||||||| ||||||||||||| || ||||||||||||||||    
T  5483922 tgaaaaggtgttggatgctaaaatagacctttatgaaaatgagttggtctattatagcaaa 5483982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 18767577 - 18767638
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||||||||||||||||||| |||||| |||||| ||| ||||||| ||||||||    
T  18767577 tgaaaaggtgttggttgctaaaatagacctttataaaaatgagtgagtctattgtagcaaac 18767638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 16591534 - 16591596
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaact 242  Q
    ||||||||||||||||||||||||||| ||| |||||| |   |||||||||| |||||||||    
T  16591534 tgaaaaggtgttggttgctaaaatagaccttcatgaaattaaatgggtctattgtagcaaact 16591596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 9244304 - 9244252
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctatt 232  Q
    |||||||||||||| |||||||||||| ||| || |||||| |||||||||||    
T  9244304 tgaaaaggtgttggatgctaaaatagaccttcataaaaatgagtgggtctatt 9244252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 203
Target Start/End: Complemental strand, 32666383 - 32666348
Alignment:
Q  168 ttttggtcaaaatgaaaaggtgttggttgctaaaat 203  Q
    |||||||| |||||||||||||||||||||||||||    
T  32666383 ttttggtctaaatgaaaaggtgttggttgctaaaat 32666348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 39240876 - 39240923
Alignment:
Q  194 ttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  39240876 ttgctaaaatagaccttcatgaaaatgggtgggtctattgtagcaaac 39240923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 29558209 - 29558157
Alignment:
Q  182 aaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattata 235  Q
    |||||||||||||||||||| |||| ||| || |||||| ||||||||||||||    
T  29558209 aaaaggtgttggttgctaaa-tagaccttcataaaaatgagtgggtctattata 29558157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 31135230 - 31135168
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaact 242  Q
    ||||||||||||||||||||||||||| ||| ||||||||| || |||||||| |||||||||    
T  31135230 tgaaaaggtgttggttgctaaaatagaccttcatgaaaatgagttggtctattgtagcaaact 31135168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 23088332 - 23088275
Alignment:
Q  184 aaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  23088332 aaggtgttggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaac 23088275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 23089278 - 23089339
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||||||||||||||||||| ||  ||||||||| ||||||||||| ||||||||    
T  23089278 tgaaaaggtgttggttgctaaaatagacctacatgaaaatgagtgggtctattgtagcaaac 23089339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 31914583 - 31914522
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||||||||| |||||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  31914583 tgaaaaggtgctggttgctaaaatagatcttcatgaaaatgagtgggtctattgtagcaaac 31914522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 20627587 - 20627525
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaact 242  Q
    |||||||||||||| ||||||||||||  || ||||||||| ||||||||||| |||||||||    
T  20627587 tgaaaaggtgttgggtgctaaaatagactttcatgaaaatgagtgggtctattgtagcaaact 20627525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 48315191 - 48315253
Alignment:
Q  178 aatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaa 240  Q
    ||||||||||||||| ||||||||||| | ||||||||||||  ||||||||||| |||||||    
T  48315191 aatgaaaaggtgttgcttgctaaaataaacctttatgaaaataagtgggtctattgtagcaaa 48315253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 34837979 - 34838040
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||||| |||||||||||||||||| ||||| || |||||| ||||||||||| ||||||||    
T  34837979 tgaaaaagtgttggttgctaaaataaaacttcataaaaatgagtgggtctattgtagcaaac 34838040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 31689237 - 31689177
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaa 240  Q
    ||||||||||  ||||||||||||||| ||| ||||||||| ||||||||||| |||||||    
T  31689237 tgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaa 31689177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 48314439 - 48314375
Alignment:
Q  168 ttttggtcaaaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctatt 232  Q
    |||| ||| |||||||||||||||| |||||||||||||  || ||||||||| |||||||||||    
T  48314439 ttttagtctaaatgaaaaggtgttgcttgctaaaatagactttcatgaaaatgagtgggtctatt 48314375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 307
Target Start/End: Complemental strand, 38961580 - 38961542
Alignment:
Q  269 ttttttgtcagtattagaagaaaaactcaaacttaaaga 307  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  38961580 ttttttgtcggtattagaagaaaaactcaaacttaaaga 38961542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 38961713 - 38961668
Alignment:
Q  97 gtaaatagtaaatgacaattacattttgtacccttcagtttcaattt 143  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  38961713 gtaaatagtaaatgacaattaca-tttgtatccttcagtttcaattt 38961668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 12206824 - 12206763
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||  ||||||||||||||| ||| || |||||| ||||||||||| ||||||||    
T  12206824 tgaaaaggtgcaggttgctaaaatagaccttcataaaaatgagtgggtctattgtagcaaac 12206763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 12210926 - 12210987
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||  ||||||||||||||| ||| ||||||||| || |||||||| ||||||||    
T  12210926 tgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagttggtctattgtagcaaac 12210987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 34978404 - 34978352
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctatt 232  Q
    ||||||||||||||||| ||||||||| ||| || |||||| |||||||||||    
T  34978404 tgaaaaggtgttggttgataaaatagaccttcataaaaatgagtgggtctatt 34978352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 42523276 - 42523214
Alignment:
Q  166 tcttttggtcaaaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtc 228  Q
    |||||||||| |||||||||||||||  ||||||||| ||| ||| || |||||| |||||||    
T  42523276 tcttttggtccaaatgaaaaggtgttacttgctaaaagagaccttcataaaaatgagtgggtc 42523214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 31135906 - 31135967
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||||||||||||||||| | ||| |||||| ||  ||| |||||| ||||||||    
T  31135906 tgaaaaggtgttggttgctaaaatacaccttcatgaaattgaatggatctattgtagcaaac 31135967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 38961769 - 38961736
Alignment:
Q  39 gaaagaggaagagaatgaggaggaccattaatgt 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  38961769 gaaagagaaagagaatgaggaggaccattaatgt 38961736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 20628346 - 20628398
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctatt 232  Q
    ||||||||||||| ||| ||||||||| ||| || |||||| |||||||||||    
T  20628346 tgaaaaggtgttgcttggtaaaatagaccttcataaaaatgggtgggtctatt 20628398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 17239402 - 17239475
Alignment:
Q  168 ttttggtcaaaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||||||| ||||||||||||| |  ||||||||||||| ||| || |||||| ||||||||||| ||||||||    
T  17239402 ttttggtccaaatgaaaaggtgctacttgctaaaatagaccttcataaaaatgagtgggtctattgtagcaaac 17239475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 42026956 - 42026895
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||  ||||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  42026956 tgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaac 42026895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 42031701 - 42031762
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||  ||||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  42031701 tgaaaaggtgcaggttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaac 42031762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 17238671 - 17238596
Alignment:
Q  166 tcttttggtcaaaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||||||||| ||| ||||||||| |  ||||||||||||| ||| || |||||| ||||||||||| ||||||||    
T  17238671 tcttttggtccaaacgaaaaggtgctacttgctaaaatagaccttcataaaaatgagtgggtctattgtagcaaac 17238596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 16802019 - 16801972
Alignment:
Q  194 ttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  16802019 ttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaac 16801972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 16802704 - 16802750
Alignment:
Q  194 ttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaa 240  Q
    ||||||||||||| |||||| |||||| ||||||||||| |||||||    
T  16802704 ttgctaaaatagacctttataaaaatgagtgggtctattgtagcaaa 16802750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 34268036 - 34267975
Alignment:
Q  180 tgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||||| ||||||||||||| ||| || |||  | ||||||||||| ||||||||    
T  34268036 tgaaaaggtgttgcttgctaaaatagaccttgataaaatggagtgggtctattgtagcaaac 34267975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 34269089 - 34269153
Alignment:
Q  177 aaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||||||||||||||| ||||||||||||| ||| || |||  |  |||||||||| ||||||||    
T  34269089 aaatgaaaaggtgttgcttgctaaaatagaccttcataaaatggaatgggtctattgtagcaaac 34269153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 34275324 - 34275388
Alignment:
Q  177 aaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    |||||||||||||||| ||||||||||||| ||| || |||  |  |||||||||| ||||||||    
T  34275324 aaatgaaaaggtgttgcttgctaaaatagaccttcataaaatggaatgggtctattgtagcaaac 34275388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 24800 - 24728
Alignment:
Q  168 ttttggtcaaaatgaaaaggtgttggttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaa 240  Q
    |||| ||| |||||||||| |  || ||| ||||||||||||| ||||||||| ||||||||||| |||||||    
T  24800 ttttagtctaaatgaaaagataatgcttgttaaaatagaacttcatgaaaatgagtgggtctattgtagcaaa 24728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 45379 - 45332
Alignment:
Q  194 ttgctaaaatagaactttatgaaaatgtgtgggtctattatagcaaac 241  Q
    ||||||||||||| ||| ||||||||| ||||||||||| ||||||||    
T  45379 ttgctaaaatagaccttcatgaaaatgagtgggtctattgtagcaaac 45332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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