View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3819_low_5 (Length: 295)
Name: NF3819_low_5
Description: NF3819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3819_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 43893340 - 43893062
Alignment:
| Q |
1 |
gcattgttggcagctgacatatgggtaatgacaatgtatagaaacaagggaaaacacagaactgaagaacaattcaaacaacttggcatttctgctggtt |
100 |
Q |
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| T |
43893340 |
gcattgttggcagctgacatatggataatgacaatgtatagaaccaagggaaaacacagaactgaagaacaattcaaacaacttggcatttctgctggtt |
43893241 |
T |
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| Q |
101 |
ttaaaagtttccgtgccttccatattgatccttatttgcctgtacttgaatttcataaatgagcagaagaaggctttgaagtgtgtggtgctttatgtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43893240 |
ttaaaagtttccgtgccttccatattgatccttatttgcctgtacttgaatttcataaatgagcagaagaaggctttgaagtgtgtggtgctttatgtga |
43893141 |
T |
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| Q |
201 |
tgatggggaaaataataaggaactttgagctaagatgctaattaattggttactgtttccttgactgtgaataaatatt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43893140 |
tgatggggaaaataataaggaactttgagctaagatgctaattaattggttactgtttccttgactgtgaataaatatt |
43893062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 43903932 - 43903743
Alignment:
| Q |
1 |
gcattgttggcagctgacatatgggtaatgacaatgtatagaaacaagggaaaacacagaactgaagaacaattcaaacaacttggcatttctgctggtt |
100 |
Q |
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||||||||| | | |||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43903932 |
gcattgttgtcgggtgacatattcataatgacaatgtataaaactaagggaaaacacagaactgaagaacaattcaaacagcttggcatttctgctggtt |
43903833 |
T |
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| Q |
101 |
ttaaaagtttccgtgccttccatattgatccttatttgcctgtacttgaatttcataaatgagcagaagaaggctttgaagtgtgtggtg |
190 |
Q |
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|| |||| ||||||||||| |||||||||||||| ||||| || |||||||| |||||||||||||||| |||||||||||| |||| |
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| T |
43903832 |
ttcttcgttttcgtgccttccacattgatccttattttcctgttctagaatttcagaaatgagcagaagaagcctttgaagtgtgcggtg |
43903743 |
T |
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