View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3819_low_6 (Length: 248)

Name: NF3819_low_6
Description: NF3819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3819_low_6
NF3819_low_6
[»] chr6 (19 HSPs)
chr6 (1-94)||(2050093-2050186)
chr6 (161-247)||(33242402-33242488)
chr6 (162-247)||(33253913-33253998)
chr6 (164-248)||(27441544-27441628)
chr6 (161-248)||(26670023-26670110)
chr6 (161-247)||(7273350-7273436)
chr6 (162-248)||(13743235-13743321)
chr6 (162-248)||(13748735-13748821)
chr6 (164-248)||(24204001-24204085)
chr6 (161-248)||(7292746-7292833)
chr6 (161-248)||(9698347-9698434)
chr6 (162-248)||(30014343-30014429)
chr6 (161-239)||(31109245-31109323)
chr6 (161-248)||(3213399-3213486)
chr6 (161-248)||(26466798-26466885)
chr6 (161-248)||(7367548-7367635)
chr6 (161-248)||(21279928-21280015)
chr6 (164-247)||(30735984-30736067)
chr6 (161-248)||(21293691-21293778)
[»] chr8 (27 HSPs)
chr8 (161-248)||(35181515-35181602)
chr8 (161-248)||(34304787-34304874)
chr8 (161-248)||(16603640-16603727)
chr8 (161-248)||(18066732-18066819)
chr8 (161-248)||(36743497-36743584)
chr8 (162-248)||(1375542-1375628)
chr8 (162-248)||(11582766-11582852)
chr8 (162-248)||(29705362-29705448)
chr8 (164-248)||(20148762-20148846)
chr8 (164-248)||(29800964-29801048)
chr8 (164-248)||(30912576-30912660)
chr8 (164-248)||(33630007-33630091)
chr8 (164-248)||(42295197-42295281)
chr8 (161-206)||(19386626-19386671)
chr8 (163-248)||(45397317-45397402)
chr8 (164-248)||(26125637-26125721)
chr8 (164-248)||(42699259-42699343)
chr8 (161-248)||(2546995-2547082)
chr8 (161-248)||(5754902-5754989)
chr8 (161-248)||(30660756-30660843)
chr8 (161-248)||(31384663-31384750)
chr8 (161-248)||(42197449-42197536)
chr8 (163-248)||(16358847-16358933)
chr8 (162-244)||(2165981-2166063)
chr8 (203-248)||(10678166-10678211)
chr8 (161-248)||(40528648-40528736)
chr8 (161-198)||(10678204-10678241)
[»] chr2 (28 HSPs)
chr2 (161-248)||(43114556-43114643)
chr2 (164-247)||(11825669-11825752)
chr2 (161-248)||(18491704-18491791)
chr2 (164-248)||(41281988-41282072)
chr2 (161-248)||(16803967-16804054)
chr2 (161-248)||(16843249-16843336)
chr2 (161-247)||(966849-966935)
chr2 (162-248)||(12415474-12415560)
chr2 (162-248)||(12427534-12427620)
chr2 (161-247)||(34895756-34895842)
chr2 (164-247)||(4299435-4299518)
chr2 (164-247)||(6518484-6518566)
chr2 (162-248)||(16096747-16096833)
chr2 (161-248)||(30838631-30838718)
chr2 (162-248)||(1750414-1750500)
chr2 (161-248)||(4764740-4764827)
chr2 (161-248)||(12302267-12302354)
chr2 (163-248)||(19047158-19047243)
chr2 (163-248)||(34817790-34817875)
chr2 (161-244)||(14285675-14285758)
chr2 (186-248)||(4451964-4452026)
chr2 (164-244)||(43490419-43490499)
chr2 (161-248)||(43335777-43335864)
chr2 (164-248)||(7070418-7070502)
chr2 (162-248)||(13780749-13780835)
chr2 (164-241)||(33229303-33229381)
chr2 (180-248)||(12531677-12531744)
chr2 (204-248)||(42849872-42849916)
[»] chr1 (24 HSPs)
chr1 (161-248)||(44112676-44112763)
chr1 (162-248)||(48119628-48119714)
chr1 (161-248)||(38113209-38113296)
chr1 (161-248)||(41065152-41065239)
chr1 (162-248)||(35003294-35003380)
chr1 (161-248)||(45427759-45427846)
chr1 (162-248)||(38335918-38336004)
chr1 (162-248)||(35000127-35000213)
chr1 (162-248)||(43571100-43571186)
chr1 (161-247)||(45639747-45639833)
chr1 (162-248)||(46168383-46168469)
chr1 (161-248)||(5489775-5489862)
chr1 (161-248)||(45705824-45705911)
chr1 (161-248)||(48498976-48499063)
chr1 (161-219)||(14427346-14427404)
chr1 (162-248)||(37814778-37814864)
chr1 (161-248)||(23989537-23989625)
chr1 (161-244)||(750323-750406)
chr1 (161-243)||(26585461-26585543)
chr1 (164-248)||(2497576-2497660)
chr1 (161-248)||(24769513-24769600)
chr1 (162-248)||(50448274-50448360)
chr1 (204-248)||(4401370-4401414)
chr1 (164-248)||(7447828-7447911)
[»] chr7 (27 HSPs)
chr7 (161-248)||(40236918-40237005)
chr7 (162-248)||(31513287-31513373)
chr7 (164-248)||(10573751-10573835)
chr7 (161-248)||(27535245-27535332)
chr7 (163-248)||(31408647-31408732)
chr7 (161-247)||(33384869-33384956)
chr7 (161-248)||(35069720-35069807)
chr7 (162-248)||(24001026-24001112)
chr7 (162-248)||(42538445-42538531)
chr7 (164-248)||(44326180-44326264)
chr7 (161-248)||(5015394-5015481)
chr7 (161-247)||(24280611-24280697)
chr7 (161-248)||(41861673-41861762)
chr7 (162-248)||(42972852-42972938)
chr7 (164-248)||(4638213-4638297)
chr7 (164-248)||(43343638-43343722)
chr7 (164-248)||(44416948-44417032)
chr7 (161-248)||(9216301-9216387)
chr7 (165-248)||(26898416-26898499)
chr7 (162-229)||(39998408-39998475)
chr7 (161-247)||(5194246-5194332)
chr7 (162-248)||(5810938-5811024)
chr7 (192-248)||(32029831-32029887)
chr7 (161-247)||(43317442-43317528)
chr7 (162-247)||(45326020-45326105)
chr7 (182-248)||(38160593-38160659)
chr7 (164-248)||(16180371-16180454)
[»] chr3 (24 HSPs)
chr3 (161-248)||(4190279-4190366)
chr3 (161-248)||(9434123-9434210)
chr3 (161-248)||(25996267-25996354)
chr3 (161-248)||(10457906-10457993)
chr3 (162-248)||(34791829-34791915)
chr3 (162-248)||(36150130-36150216)
chr3 (162-248)||(42100688-42100774)
chr3 (162-248)||(45126942-45127028)
chr3 (162-248)||(51757593-51757679)
chr3 (161-247)||(52627992-52628078)
chr3 (164-248)||(27748565-27748649)
chr3 (161-248)||(25413680-25413767)
chr3 (161-248)||(40808864-40808951)
chr3 (161-248)||(46941052-46941139)
chr3 (163-248)||(54237097-54237182)
chr3 (161-248)||(24688416-24688503)
chr3 (161-248)||(54246162-54246249)
chr3 (163-248)||(40480750-40480835)
chr3 (163-248)||(42394433-42394518)
chr3 (161-248)||(47191040-47191126)
chr3 (164-248)||(53581872-53581956)
chr3 (200-248)||(51249346-51249394)
chr3 (161-248)||(53273698-53273785)
chr3 (161-247)||(29558249-29558335)
[»] chr5 (13 HSPs)
chr5 (162-248)||(32473408-32473494)
chr5 (161-248)||(7617132-7617219)
chr5 (161-248)||(17208073-17208160)
chr5 (162-248)||(41334677-41334763)
chr5 (162-248)||(2614663-2614749)
chr5 (162-248)||(22512305-22512391)
chr5 (164-248)||(5256997-5257081)
chr5 (162-234)||(33855071-33855143)
chr5 (161-248)||(18033981-18034068)
chr5 (161-248)||(30622733-30622819)
chr5 (161-247)||(38470578-38470664)
chr5 (161-248)||(33801468-33801555)
chr5 (161-248)||(39122447-39122533)
[»] chr4 (36 HSPs)
chr4 (161-247)||(711959-712045)
chr4 (162-248)||(17619166-17619252)
chr4 (161-247)||(32728356-32728442)
chr4 (161-247)||(48435594-48435680)
chr4 (162-248)||(55272390-55272476)
chr4 (161-242)||(960890-960971)
chr4 (164-247)||(3756261-3756344)
chr4 (164-248)||(35037007-35037091)
chr4 (161-248)||(1771280-1771367)
chr4 (161-248)||(27864563-27864650)
chr4 (161-248)||(28982836-28982923)
chr4 (161-244)||(28988472-28988555)
chr4 (161-248)||(33703140-33703227)
chr4 (161-248)||(55966360-55966447)
chr4 (161-247)||(46827721-46827807)
chr4 (164-248)||(27893856-27893940)
chr4 (161-247)||(25051692-25051778)
chr4 (162-248)||(27550309-27550395)
chr4 (161-242)||(49229684-49229765)
chr4 (164-248)||(43514700-43514784)
chr4 (161-248)||(23035979-23036066)
chr4 (162-244)||(27316731-27316813)
chr4 (162-248)||(45490327-45490413)
chr4 (195-247)||(19879987-19880039)
chr4 (164-248)||(38851515-38851599)
chr4 (161-248)||(48463464-48463551)
chr4 (162-248)||(35017733-35017818)
chr4 (164-246)||(41327559-41327641)
chr4 (162-247)||(12496956-12497041)
chr4 (164-248)||(39631102-39631187)
chr4 (163-248)||(41878407-41878492)
chr4 (164-248)||(43949815-43949900)
chr4 (162-248)||(41847971-41848057)
chr4 (203-248)||(36004130-36004175)
chr4 (164-248)||(31680904-31680988)
chr4 (162-198)||(36004168-36004204)
[»] scaffold0003 (1 HSPs)
scaffold0003 (164-248)||(45733-45817)
[»] scaffold0100 (1 HSPs)
scaffold0100 (162-248)||(35470-35556)
[»] scaffold0119 (1 HSPs)
scaffold0119 (161-248)||(684-771)
[»] scaffold0385 (1 HSPs)
scaffold0385 (161-248)||(11250-11337)
[»] scaffold0038 (1 HSPs)
scaffold0038 (163-248)||(112656-112741)
[»] scaffold0187 (2 HSPs)
scaffold0187 (161-248)||(14202-14289)
scaffold0187 (161-248)||(24530-24617)
[»] scaffold0157 (1 HSPs)
scaffold0157 (162-247)||(23436-23521)


Alignment Details
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 2050186 - 2050093
Alignment:
Q  1 aaataaggatacaattttcttgaatgaaatgaaattaaggatcaaaatgcaattaaacttttcaaaatatttcagttcttcttttaaagaaaga 94  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||    
T  2050186 aaataaggatacaattttcgcgaatgaaatgaaattaaggatcaaaatgcaattaaacttttcaaaatatttcagatgttattttaaagaaaga 2050093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 33242402 - 33242488
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||||||||||||||||||||  ||||||||||||| |||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  33242402 aggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcacaa 33242488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 33253913 - 33253998
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    |||||||||||||||||||||  ||||||| |||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||    
T  33253913 ggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaa 33253998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 27441544 - 27441628
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||| |||||||||||||||||| |||| |  |||||||| ||| ||||||||||||||||||||||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaac 27441628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 26670110 - 26670023
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| || ||||||  ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  26670110 aggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaac 26670023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 7273436 - 7273350
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||||||||||||||||||||| ||| || |||||| |||| |||||| |||||||||| || |||||||||| ||||||||||||    
T  7273436 aggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcacaa 7273350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 13743321 - 13743235
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||  ||| ||||||| || ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  13743321 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaac 13743235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 13748821 - 13748735
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||  ||| ||||||| || ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  13748821 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaac 13748735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 24204085 - 24204001
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||  ||| || ||||||||||| |||||  ||||||||||||| |||||||||| |||||||||||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcacaac 24204001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 7292746 - 7292833
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||| |||||||  ||| |||||||||  ||||||||||  |||||||||||| |||||||||| |||||||||||||    
T  7292746 aggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaac 7292833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 9698434 - 9698347
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| || |||| || ||| ||||||  |||||||||||| |||||||||| |||||||||||||    
T  9698434 aggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaac 9698347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 30014343 - 30014429
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||| || |||| || |||||||| | ||||||||||| | |||||||||| |||||||||||||    
T  30014343 ggaaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctcacaac 30014429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 31109323 - 31109245
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattca 239  Q
    ||||||||||||||||||||||| ||||||||||| || |||||||||| |||| | |||||| |||||| ||||||||    
T  31109323 aggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattca 31109245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 3213399 - 3213486
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||| ||||||| ||| ||||||| |  ||| |||||| ||||||||| ||| |||||||||||||||| |||||||    
T  3213399 aggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaac 3213486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 26466798 - 26466885
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||| ||||||| ||| || ||||||| ||| |||||  ||||||||||||  |||||||||| |||||||||||||    
T  26466798 aggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcacaac 26466885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 7367548 - 7367635
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||| ||||||| |  ||| |||||||||  ||| |||| | ||||||||||||| |||||||||| |||||||||||||    
T  7367548 aggaaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaac 7367635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 21279928 - 21280015
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| |  ||||  | |||  ||| | ||||||||||||| ||||||||||||||||||||||||    
T  21279928 aggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctcacaac 21280015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 30735984 - 30736067
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||||||||||||||||   ||| || ||||||| ||| |||||| |||||||||| || |||||||||| ||||||||||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctcacaa 30736067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 21293778 - 21293691
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||| ||||||| ||| |||||||    | | |||||| ||||||||| ||| |||||||||||||||| |||||||    
T  21293778 aggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcatttcacaac 21293691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 35181515 - 35181602
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||| |||||||||||||    
T  35181515 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaac 35181602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 34304787 - 34304874
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||| || |||||||||||||||||| |||||| |||| ||||||||||||||||||| |||||||||||||    
T  34304787 aggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaac 34304874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 16603727 - 16603640
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||| |||||| ||||||||||||| ||||||||||| |||| ||||  |||||||||||||||||||||||||||    
T  16603727 aggaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcacaac 16603640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 18066819 - 18066732
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| |||||||||||  ||||| |||| | ||||||||||||| ||||| |||| |||||||||||||    
T  18066819 aggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcacaac 18066732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 36743584 - 36743497
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| || |||| || ||| ||||||  |||||||||||| |||||||||| |||||||||||||    
T  36743584 aggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaac 36743497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 1375542 - 1375628
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||| |||||||||||||  ||| |||||||||| ||| |||||| ||| ||||||||| ||||||||||||| ||||||||||    
T  1375542 ggaaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaaatttatctcacaac 1375628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 11582766 - 11582852
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||| || |||| || ||| ||||||  |||||||||||| |||||||||| |||||||||||||    
T  11582766 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaac 11582852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 29705362 - 29705448
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||| |  ||||||| ||| |||||| ||||||||||||| |||||| ||| |||||||||||||    
T  29705362 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcacaac 29705448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 20148762 - 20148846
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||| ||||||| ||| ||||||| || ||| |||||| ||| ||||||||| |||||||||| |||||||||||||    
T  20148762 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaac 20148846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 29801048 - 29800964
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||| ||||||  ||| ||||||| || ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  29801048 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaac 29800964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 30912660 - 30912576
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||| ||| || ||||||| ||| |||||  ||||||||||||  |||||||||| |||||||||||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctcacaac 30912576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 33630091 - 33630007
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||| |||||||| |||||||||||||  ||| ||||||  ||| |||||||||||||| |||| |||||||||||||    
T  33630091 aaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcacaac 33630007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 42295197 - 42295281
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||| ||| || ||||||  ||| |||||  ||||||||||||| |||||||||| |||||||||||||    
T  42295197 aaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcacaac 42295281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 19386671 - 19386626
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatac 206  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  19386671 aggaaaatgttacatgaacaccctttaatcatacaccctattatac 19386626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 45397317 - 45397402
Alignment:
Q  163 gaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||| ||||||||| ||| || ||||||| ||| ||||||  |||||||||||| ||||| |||| |||||||||||||    
T  45397317 gaaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtattagggatatttttgtaagttcatctcacaac 45397402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 26125637 - 26125721
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||| ||||||| ||| |||||||  | ||| ||||||  |||||||||||| |||||||||| |||||||||||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaac 26125721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 42699259 - 42699343
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||| ||| || ||||||| ||| ||||||  |||||||| ||| ||||| |||| |||||||||||||    
T  42699259 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctcacaac 42699343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 2546995 - 2547082
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||| | ||| |  ||||| | ||| |||||| ||||||||||||| ||||| |||| |||||||||||||    
T  2546995 aggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcacaac 2547082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 5754902 - 5754989
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||  ||| || |||| || ||| |||| | ||| ||||||||| |||||||||| |||||||||||||    
T  5754902 aggaaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctcacaac 5754989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 30660843 - 30660756
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| |  |||| || ||| ||||||  |||||||||||| |||||||||| ||||||| |||||    
T  30660843 aggaaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcatcttacaac 30660756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 31384663 - 31384750
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||| | |||||||||||||| ||| || ||||  ||||| |||||| ||||||||||| | |||||||||| |||||||||||||    
T  31384663 aggaaagtattacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcacaac 31384750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 42197536 - 42197449
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||  ||| || ||||||| |||  ||||   |||||||||||| |||||||||| |||||||||||||    
T  42197536 aggaaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttcatctcacaac 42197449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 16358933 - 16358847
Alignment:
Q  163 gaaaatgttacat-gaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||| ||| |||| |||||||||||||||||| |||| | |||| |||| | | |||||| |||||||||||||||||    
T  16358933 gaaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctcacaac 16358847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 2166063 - 2165981
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctca 244  Q
    ||||||| |||||||||||||  ||| || ||||||| ||| || ||| |||||||||| || |||||||||| |||||||||    
T  2166063 ggaaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcatctca 2165981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 10678211 - 10678166
Alignment:
Q  203 atacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||||||    
T  10678211 atacaccccatatattaaggacattttggtaaattcatctcacaac 10678166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 40528736 - 40528648
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaat-catacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||  ||||||||||||| || || || | |||| ||| |||||| ||| |||||||||||||||| |||||| ||||||||||    
T  40528736 aggaaaataatacatgaacacccttttattcacaaaccccattgtacaccccatatattagggacattttgataaatttatctcacaac 40528648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 10678241 - 10678204
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccc 198  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  10678241 aggaaaatgttacatgaataccctttaatcatacaccc 10678204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 43114556 - 43114643
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||| |||||||||||||    
T  43114556 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaac 43114643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 11825752 - 11825669
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    |||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaa 11825669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 18491704 - 18491791
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||| |||| | ||||||||||||||||||||||||||    
T  18491704 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcacaac 18491791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 41282072 - 41281988
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||| ||| |||||||||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcacaac 41281988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 16803967 - 16804054
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| | |||| ||||||||||||||| ||| |||||||||||||    
T  16803967 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaac 16804054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 16843249 - 16843336
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| | |||| ||||||||||||||| ||| |||||||||||||    
T  16843249 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaac 16843336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 966935 - 966849
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||| |||| | || ||||||||||||||||||||||    
T  966935 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcacaa 966849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 12415560 - 12415474
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||||||||||||| |||| |||||| |||| ||||||||||||||||||| || ||||||||||    
T  12415560 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaac 12415474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 12427620 - 12427534
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||||||||||||| |||| |||||| |||| ||||||||||||||||||| || ||||||||||    
T  12427620 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaac 12427534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 34895842 - 34895756
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    |||||| |||||||||||||||  ||||||| |||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||    
T  34895842 aggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaa 34895756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 4299518 - 4299435
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||||||| |||||||||| |||||||||||||||||| |||||  |||| ||||  ||||||||||||||||||||||||||    
T  4299518 aaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctcacaa 4299435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 6518566 - 6518484
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    |||||||||||||||||||  |||||||||||| ||||| |||||| |||| ||||||||||||||||||| ||||||||||||    
T  6518566 aaaatgttacatgaacacct-ttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaa 6518484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 16096747 - 16096833
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||| || ||||||| |||||||||| ||||||||||||| |||||||| | || ||||||||||    
T  16096747 ggaaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggtgagttaatctcacaac 16096833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 30838631 - 30838718
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| |  |||| | |||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  30838631 aggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaac 30838718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 1750414 - 1750500
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||| || ||||||| ||| ||||||  |||||||||||| ||||| |||| |||||||||||||    
T  1750414 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaac 1750500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 4764827 - 4764740
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||| ||||||  ||| || ||||||||||| |||||| |||||||||   | ||||||||||||||||||||||||    
T  4764827 aggaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcacaac 4764740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 12302354 - 12302267
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| |  ||||||| ||| ||||||  |||||||||||| ||||| |||| |||||||||||||    
T  12302354 aggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaac 12302267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 19047158 - 19047243
Alignment:
Q  163 gaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||| ||| || ||||  | ||| ||||||  |||||||||||| |||||||||| |||||||||||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaac 19047243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 34817875 - 34817790
Alignment:
Q  163 gaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||| ||| ||| |||||  ||| |||||| |||| | || | ||||||||||||||||||||||||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctcacaac 34817790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 14285675 - 14285758
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctca 244  Q
    |||||||| |||||  ||||||| |||||||||||||||||| ||||||  || |||||  || ||||||||||||||||||||    
T  14285675 aggaaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaaattcatctca 14285758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 4452026 - 4451964
Alignment:
Q  186 taatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||| | |||| ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  4452026 taatcatacatcttattgtacaccatatgcattagggatattttggtaaattcatctcacaac 4451964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 43490499 - 43490419
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctca 244  Q
    |||||||||||||||||||| ||| || |||| || ||| |||||   |||||||||||| |||||||||| |||||||||    
T  43490499 aaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctca 43490419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 43335864 - 43335777
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||| ||||||| |  ||| || ||||||  ||| |||| | ||||||||||||| |||||||||| |||||||||||||    
T  43335864 aggaaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaac 43335777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 7070418 - 7070502
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||| ||| ||||||| || ||| ||  |  ||| |||| ||||||||||| ||||||||||| |||||    
T  7070418 aaaatgttacatgaacaccctttattcatacatcccattgtaacctccatttattggggacattttgataaattcatcttacaac 7070502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 13780835 - 13780749
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||| |||||   ||| ||| |||||  ||| |||||| |||  |||||||| |||||| |||||||||||||||||    
T  13780835 ggaaaatgttacatcaacacattttattcacacacctcattgtacaccccatacattagggatattttgataaattcatctcacaac 13780749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 33229303 - 33229381
Alignment:
Q  164 aaaatgttacatgaacaccccttaat-catacaccctattatacaccacatgtattagggacattttggtaaattcatc 241  Q
    |||||| ||||||||||||| || || | ||||||  ||| |||||| ||||||||||||| |||||||||| ||||||    
T  33229303 aaaatgatacatgaacacccttttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatc 33229381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 12531744 - 12531677
Alignment:
Q  180 accccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||| |||||||||||||| ||| |||||| || | |||| || | |||||||||||||||||||||||    
T  12531744 accctttaatcatacacccaattgtacacctcaagcattatgggc-ttttggtaaattcatctcacaac 12531677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 42849916 - 42849872
Alignment:
Q  204 tacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||| ||||||||||||| |||||| ||| |||||||||||||    
T  42849916 tacaccccatgtattagggatattttgataagttcatctcacaac 42849872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 44112676 - 44112763
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||| |||||||||||||    
T  44112676 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaac 44112763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 48119628 - 48119714
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||| |||| ||| ||||||||||||||||||||||||    
T  48119628 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaac 48119714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 38113296 - 38113209
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||| |||||||||| |||||||||||||||||| |||||| |||| ||||  |||||||||||||||||||||||||||    
T  38113296 aggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcacaac 38113209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 41065152 - 41065239
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||| |||| ||||||| ||||||||||| |||||||||||||    
T  41065152 aggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctcacaac 41065239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 35003294 - 35003380
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||  |||| ||| ||||||||||||||||||||||||    
T  35003294 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcacaac 35003380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 45427846 - 45427759
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||| |||  |||||||||||||||||| |||||  |||| ||||||||||||||||||| |||||||||||||    
T  45427846 aggaaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctcacaac 45427759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 38335918 - 38336004
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||||||||||||| |||| |||| | |||| |||| ||| ||||||||||||||||||||||||    
T  38335918 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcacaac 38336004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 35000213 - 35000127
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||  |||||||||||| ||||| || ||  |||||||||||||||||||| |||||| ||||||||||    
T  35000213 ggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctcacaac 35000127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 43571186 - 43571100
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||| || ||||||  ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  43571186 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaac 43571100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 45639833 - 45639747
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||||||||||||||||||| | ||||||||||| |||||| |||||| |||  |||| ||| |||||||||||||||||||||||    
T  45639833 aggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcacaa 45639747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 46168383 - 46168469
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||||||||| | |||||| ||||||  ||| |||| ||| ||||||||||||||||||||||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctcacaac 46168469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 5489775 - 5489862
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| || |||| || ||| ||||||  |||||||||||| |||||||||| |||||||||||||    
T  5489775 aggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaac 5489862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 45705824 - 45705911
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||| |||||||||| |||||||||||  ||||| |||||  |||| |||| |||||||||| |||||||||||||||||    
T  45705824 aggaaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctcacaac 45705911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 48499063 - 48498976
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||| | ||| |  ||||| | ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  48499063 aggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaac 48498976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 14427346 - 14427404
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtatta 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||    
T  14427346 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 37814778 - 37814864
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||| ||||||| ||| ||||||| |  ||| |||||| ||||||||| ||| |||||||||||||||| |||||||    
T  37814778 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaac 37814864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 23989625 - 23989537
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaat-catacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| || || ||||||| | ||| || |||  |||||||||||| ||||||||||||| ||||||||||    
T  23989625 aggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaaatttatctcacaac 23989537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 750406 - 750323
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctca 244  Q
    ||||||||||||| ||||||||| |   || ||||||| ||| |||||| ||||||| ||||| |||||| |||||||||||||    
T  750406 aggaaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttgataaattcatctca 750323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 26585461 - 26585543
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctc 243  Q
    |||||||||||| |||||||  | ||||||||||||  |||| |||||| |||| |||| ||| ||||| |||||||||||||    
T  26585461 aggaaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctc 26585543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 2497660 - 2497576
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||| ||||||  ||| |||||||  | ||| |||||| ||| ||||| ||| |||||||||| |||||||||||||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcacaac 2497576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 24769600 - 24769513
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||| ||||||||||  ||| |  ||||| | ||| |||||| ||||||||||||| |||||||||| ||| | |||||||    
T  24769600 aggaaaatgtttcatgaacaccttttatttctacactccattgtacaccccatgtattagggatattttggtaagttcttatcacaac 24769513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 50448360 - 50448274
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||| | ||| |  ||||| | ||| ||||||  |||||||||||| ||||| |||| ||||||| |||||    
T  50448360 ggaaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaagttcatcttacaac 50448274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 4401370 - 4401414
Alignment:
Q  204 tacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||| |||||||||| || |||||||||| |||||||||||||    
T  4401370 tacaccccatgtattagagatattttggtaagttcatctcacaac 4401414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 7447828 - 7447911
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||| || ||| || |||| || ||| |||||| |||||||||  || |||||| ||| |||||||||||||    
T  7447828 aaaatgttacatgaacatcctttattcctacatcccattgtacacc-catgtattacagatattttgataagttcatctcacaac 7447911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 40236918 - 40237005
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||||||||||| |||||| |||||| |||| ||||||||||||||||||| |||||||||||||    
T  40236918 aggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcacaac 40237005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 31513287 - 31513373
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||| | |||||||||||||||||| || ||| |||| |||| ||| ||||||||||||||||||||||||    
T  31513287 ggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcacaac 31513373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 10573751 - 10573835
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||| ||||||| ||| ||||||| |||||| |||||| ||||||||||| | ||||||||||||||||||||||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcacaac 10573835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 27535332 - 27535245
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||||  ||||| |||  ||||||||||||| |||||||||||||    
T  27535332 aggaaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcacaac 27535245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 31408732 - 31408647
Alignment:
Q  163 gaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||| |||||||||||| ||||| |||| | |||| |||| ||| |||||||||||||||| |||||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcacaac 31408647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 33384869 - 33384956
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccc-tattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    |||||||||||||||||||| |  |||||||||||||| |||| || ||  |||| ||||||||||||||||||||||||||||||||    
T  33384869 aggaaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctcacaa 33384956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 35069720 - 35069807
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||| | ||| || ||||||  ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  35069720 aggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaac 35069807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 24001112 - 24001026
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||| || |||| || ||| ||||||  |||||||||||| |||||||||| |||||||||||||    
T  24001112 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaac 24001026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 42538531 - 42538445
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||| || |||| || ||| ||||||  |||||||||||| |||||||||| |||||||||||||    
T  42538531 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaac 42538445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 44326180 - 44326264
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||| ||||||| ||| ||||||| || ||| |||||| ||| ||||||||| |||||||||| |||||||||||||    
T  44326180 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaac 44326264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 5015394 - 5015481
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||| | ||| |  ||||| | ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  5015394 aggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaac 5015481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 24280697 - 24280611
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||||||||||| ||||||||| ||| |||||||||||||| |||| | |||| | |||  | |||||||||||||||||||||||    
T  24280697 aggaaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctcacaa 24280611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 41861673 - 41861762
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtat--tagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||||||  ||||||  ||| || |||||||||| || ||||||||||    
T  41861673 aggaaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtattatagagatattttggtaagtttatctcacaac 41861762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 42972852 - 42972938
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||| |||||| || ||| || ||||| | ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  42972852 ggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaac 42972938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 4638297 - 4638213
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||  ||| |||||||| | ||| |||||| ||| ||||| ||| |||||||||| |||||||||||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcacaac 4638213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 43343722 - 43343638
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||| |  ||| |  ||||||||||| |||||| ||||||||||||| |||||| ||| |||||||||||||    
T  43343722 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaac 43343638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 44417032 - 44416948
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||| |  ||| |  ||||||||||| |||||| ||||||||||||| |||||| ||| |||||||||||||    
T  44417032 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaac 44416948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 9216301 - 9216387
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| || || | |||||| |||||| |||| ||||| || |||||||||| |||||||||||||    
T  9216301 aggaaaatgttacatgaacaccctttattcctatatcctattgtacacc-catgcattagagatattttggtaagttcatctcacaac 9216387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 26898499 - 26898416
Alignment:
Q  165 aaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||  ||| |||||||||| ||| ||||   ||||||||||||| |||||||||| ||||||| |||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatcttacaac 26898416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 39998408 - 39998475
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacatttt 229  Q
    ||||||||||||||||||||   ||||||||||| |||||| |||||| ||||||||||||| |||||    
T  39998408 ggaaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 5194332 - 5194246
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||||||||||||||||||||  ||| |||||||||  ||| ||||||  |||| ||| ||| |||||| ||||||||||||||||    
T  5194332 aggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctcacaa 5194246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 5811024 - 5810938
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||| ||||| ||| || ||||||| ||| ||||||  || ||||||||| |||||| ||| |||||||||||||    
T  5811024 ggaaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttgataagttcatctcacaac 5810938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 32029887 - 32029831
Alignment:
Q  192 tacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||| ||| |||||| ||||||||||||| |||||||||||||||||| |||||    
T  32029887 tacaccccattgtacaccccatgtattagggatattttggtaaattcatctaacaac 32029831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 43317442 - 43317528
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||||||||||||||||||||  ||| |||||||||  ||| |||| |  |||  ||||||| |||||| ||||||||||||||||    
T  43317442 aggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcacaa 43317528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 45326020 - 45326105
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||| |||||||| ||||||  ||| ||||||| |  ||| |||||| ||| ||||||||| |||||||||| ||||||||||||    
T  45326020 ggaaagtgttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaagttcatctcacaa 45326105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 38160659 - 38160593
Alignment:
Q  182 cccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||| || ||||| | ||| |||||| ||||||||||||| ||||| |||| |||||||||||||    
T  38160659 cccttattcttacactccattgtacaccccatgtattagggatattttagtaacttcatctcacaac 38160593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 16180454 - 16180371
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||| ||||||  ||| || ||||||| ||| |||||| || ||||||   | ||||||||||||||||||||||||    
T  16180454 aaaatgttacatcaacaccatttattcctacaccc-attgtacaccccacgtattataaatattttggtaaattcatctcacaac 16180371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 4190366 - 4190279
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||| || ||||||||||||||||||||||||    
T  4190366 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcacaac 4190279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 9434123 - 9434210
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||||| |||| ||||||||||||||||||| |||||||||||||    
T  9434123 aggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaac 9434210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 25996267 - 25996354
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||||||||||| | |||| |||||| ||| ||||| ||||||||||||||||||||||||||||    
T  25996267 aggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcacaac 25996354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 10457993 - 10457906
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||| |||| |||| ||| ||||||||||||| ||||||||||    
T  10457993 aggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctcacaac 10457906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 34791829 - 34791915
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||||||||||||| |||| || ||| |||| ||||||||||||||  ||| |||||||||||||    
T  34791829 ggaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctcacaac 34791915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 36150130 - 36150216
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||| |||| ||| |||||||||| ||||||||||  |||||| ||||| |||||||||| |||||||||||||    
T  36150130 ggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcacaac 36150216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 42100688 - 42100774
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||| || ||||||  ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  42100688 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaac 42100774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 45127028 - 45126942
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||| ||||||| ||| ||||||| || ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  45127028 ggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaac 45126942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 51757593 - 51757679
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||| |||||| ||||||| |||||||||||||||||| |||||| |||| |||| ||||||||| |||| |||||||||||||    
T  51757593 ggaaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctcacaac 51757679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 52628078 - 52627992
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||||||||||| ||||||||| ||||||||||| |||||| |||||| |||| |||| | | |||||||||||||||||||||||    
T  52628078 aggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcacaa 52627992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 27748565 - 27748649
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||  ||| |||||||||  ||||||||||  |||||||||||| |||||||||| |||||||||||||    
T  27748565 aaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctcacaac 27748649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 25413680 - 25413767
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| || ||||||| ||| ||||||  |||||||||||| ||||| |||| |||||||||||||    
T  25413680 aggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcacaac 25413767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 40808864 - 40808951
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||| ||||||  ||| || ||||||| ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  40808864 aggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcacaac 40808951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 46941052 - 46941139
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| || |||| |  ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  46941052 aggaaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctcacaac 46941139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 54237097 - 54237182
Alignment:
Q  163 gaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||| ||| || |||| || ||| ||||||  |||||||||||| |||||||||| |||||||||||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaac 54237182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 24688503 - 24688416
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| |  ||||| | ||| ||||||  |||||||||||| |||||||||| |||||||||||||    
T  24688503 aggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcacaac 24688416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 54246249 - 54246162
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| || ||||||| ||| ||||||  ||||||||| || ||||| |||| |||||||||||||    
T  54246249 aggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcacaac 54246162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 40480750 - 40480835
Alignment:
Q  163 gaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||| ||| |||||  ||| ||| |||| |  |||||||||||| |||||||||| |||||||||||||    
T  40480750 gaaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttcatctcacaac 40480835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 42394518 - 42394433
Alignment:
Q  163 gaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||| ||| || ||||  | ||| ||||||  |||||||||||| |||||||||| |||||||||||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaac 42394433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 47191126 - 47191040
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| || ||||||  ||| |||||| |||||||||| || |||||| ||| |||||||||||||    
T  47191126 aggaaaatgttacatgaacaccctttattcctacacctcattgtacacc-catgtattagagatattttgataagttcatctcacaac 47191040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 53581956 - 53581872
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||| | ||| |||||||| | ||| |||| |  |||||||||||| |||||| ||| |||||||||||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcacaac 53581872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 51249346 - 51249394
Alignment:
Q  200 attatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||| |||| |||| ||| ||||||||||||||||||||||||    
T  51249346 attatacacctcatgcattaaggatattttggtaaattcatctcacaac 51249394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 53273785 - 53273698
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||| ||||||| |  ||| || || |||  ||| |||| | ||||||||||||| |||||||||| |||||||||||||    
T  53273785 aggaaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaac 53273698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 29558335 - 29558249
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    |||| ||||||| |||||||||| ||| ||||||| |  ||| ||||||  || ||||||| | || ||||||||||||||||||||    
T  29558335 aggacaatgttatatgaacaccctttattcatacatctcattgtacaccctatatattaggaatatattggtaaattcatctcacaa 29558249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 32473494 - 32473408
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |||||||| |||||||||| |||||||||||||    
T  32473494 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcacaac 32473408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 7617132 - 7617219
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| |||||||| | |||||||||| ||||||||||||| |||||||||| |||||||||||||    
T  7617132 aggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcacaac 7617219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 17208073 - 17208160
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||| ||||||||| ||||||||||||  |||| |||||| |||| |||| ||||||||||||||||||||||||||||    
T  17208073 aggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcacaac 17208160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 41334763 - 41334677
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||| |||||||||  ||||||||||  |||||||||||| |||||||||| |||||||||||||    
T  41334763 ggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaac 41334677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 2614749 - 2614663
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||| || |||| || ||| ||||||  |||||||||||| |||||||||| |||||||||||||    
T  2614749 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaac 2614663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 22512305 - 22512391
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||| || ||||| | ||| |||||  ||||||||||||| |||||||||| |||||||||||||    
T  22512305 ggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcacaac 22512391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 5256997 - 5257081
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||| ||||||  ||| ||||||| || ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaac 5257081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 33855143 - 33855071
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaa 234  Q
    |||||||||||||||||||||| ||| || ||||||| ||| |||||| ||||||||||| ||||||||||||    
T  33855143 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaa 33855071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 18033981 - 18034068
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| || ||||| | ||| ||||||  |||||||||||| ||||| |||| |||||||||||||    
T  18033981 aggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcacaac 18034068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 30622819 - 30622733
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||| || |||||||||||||||||| || | | |||| |||| ||| ||||||||||||| ||||||||||    
T  30622819 aggaaaatgttacatgaacatcctttaatcatacaccctattgta-agcccatgcattaaggatattttggtaaatttatctcacaac 30622733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 38470578 - 38470664
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||||||||||||| ||||||| ||| |||||||  | ||| |||||| ||||||||| ||| |||||||||||||||| ||||||    
T  38470578 aggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcatttcacaa 38470664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 33801468 - 33801555
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||| || ||| |  ||||||| ||| |||||  ||||||||||||| ||||| |||| |||||||||||||    
T  33801468 aggaaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctcacaac 33801555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 39122533 - 39122447
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||| | |||||||||||||  ||| ||||||| |  |||| ||||| ||||||||||| | ||||||||||||||||||||||||    
T  39122533 aggaaactattacatgaacaccttttattcatacatctaattagacacc-catgtattaggaatattttggtaaattcatctcacaac 39122447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 711959 - 712045
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||  ||| |||| ||| |||||||||||||||||||||||    
T  711959 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcacaa 712045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 17619252 - 17619166
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||  |||||||||||||||||| |||||| |||| |||| ||| ||||||||||||||||||||||||    
T  17619252 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaac 17619166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 32728356 - 32728442
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    |||||||||||||||||||| || |||||||||||||||||| |||||| |||| |||| ||||||||| |||||||||||||||||    
T  32728356 aggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcacaa 32728442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 48435680 - 48435594
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    |||||| |||||||||||||||  ||||||| |||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||    
T  48435680 aggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaa 48435594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 55272476 - 55272390
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||| || |||||||||||| ||||| |||||| |||| |||| ||| ||||||||||||||||||||||||    
T  55272476 ggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaac 55272390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 960971 - 960890
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatct 242  Q
    ||||||||||||||||||||||| |||||||||||| ||||| ||||||  ||  |||||||||||||||||||||||||||    
T  960971 aggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatct 960890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 3756344 - 3756261
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    |||||||||||||||||||| |||||||||||||||||| |||||| |||| |||| ||| ||||| ||||||| |||||||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctcacaa 3756261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 35037007 - 35037091
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||| ||||| |||| ||||||| ||||| |||||| |||| |||| ||| ||||||||||||||||||||||||    
T  35037007 aaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaac 35037091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 1771367 - 1771280
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| || ||||||| ||| |||||| |||||||||| || |||||| ||| |||||||||||||    
T  1771367 aggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcacaac 1771280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 27864563 - 27864650
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||| ||||||  ||| ||||||| || ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  27864563 aggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaac 27864650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 28982923 - 28982836
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| |  ||||||||||| |||| | ||| ||||||||| |||||||||| |||||||||||||    
T  28982923 aggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcacaac 28982836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 28988472 - 28988555
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctca 244  Q
    ||||||||||||||||||||||| ||| |||||||||  ||| |||||| |||| | ||||||||||||| |||||||||||||    
T  28988472 aggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctca 28988555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 33703140 - 33703227
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| |  |||| | |||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  33703140 aggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaac 33703227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 55966447 - 55966360
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||| ||||||| ||| ||||||| || ||| |||| | ||||||||||||| |||||||||| |||||||||||||    
T  55966447 aggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcacaac 55966360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 46827807 - 46827721
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||||||||||||||||||||| |||||||||||| ||||| ||||||  ||| |||| | || |||||||||||| |||||||||    
T  46827807 aggaaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctcacaa 46827721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 27893940 - 27893856
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||| ||||||  ||| ||||||| || ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  27893940 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaac 27893856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 25051692 - 25051778
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    |||||||||| |||||||||| | ||| || ||||||| ||| ||||||  |||||||||||| |||||||||| ||||||||||||    
T  25051692 aggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctcacaa 25051778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 27550309 - 27550395
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||| |  ||||| | ||| |||||| ||||||||||||| |||||||||| ||||||| |||||    
T  27550309 ggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatcttacaac 27550395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 49229765 - 49229684
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatct 242  Q
    |||||||||||| ||||||| || |||||||||||||||||| |||||  |||| |||| ||| ||| ||||||||||||||    
T  49229765 aggaaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 43514784 - 43514700
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||| ||| || ||||| | ||| |||||  ||||||||||||  |||||||||| |||||||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcacaac 43514700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 23035979 - 23036066
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||  || ||| || ||||||||||| ||||||  || ||||||||| ||||| |||| |||||||||||||    
T  23035979 aggaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctcacaac 23036066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 27316813 - 27316731
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctca 244  Q
    ||||||||||| | |||||||| ||| || ||||||  |||||||||| ||||||||| ||| |||||||||| |||||||||    
T  27316813 ggaaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaagttcatctca 27316731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 45490413 - 45490327
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||   ||| | ||||| || ||| |||||| ||||||||||||| | ||| ||||||||||||||||||    
T  45490413 ggaaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaaattcatctcacaac 45490327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 19879987 - 19880039
Alignment:
Q  195 accctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    |||||||| |||||| ||| ||||| |||||||||||||||||||||||||||    
T  19879987 accctattgtacaccccatatattatggacattttggtaaattcatctcacaa 19880039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 38851515 - 38851599
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||| | || ||||||||||| | || | |||||  |||| |||| |||||||||| |||||||||||||||||    
T  38851515 aaaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctcacaac 38851599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 48463551 - 48463464
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||| ||||||  ||| |||||||    ||| |||| | ||||||||||||| |||||||||| |||||||||||||    
T  48463551 aggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcacaac 48463464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 35017733 - 35017818
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||||| ||| || || | |  ||| |||||| ||||||| ||||| |||||||||| |||||||||||||    
T  35017733 ggaaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgtat-agggatattttggtaagttcatctcacaac 35017818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 41327641 - 41327559
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcaca 246  Q
    ||||||||||||  |||||| ||| ||| |||||| ||| ||||||  ||| | || ||||||||||||||||||||||||||    
T  41327641 aaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctcaca 41327559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 12496956 - 12497041
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||||||||| |||||||||| ||| || ||||| | ||| |||| | |||||||||| || |||||||||| ||||||| ||||    
T  12496956 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaa 12497041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 39631102 - 39631187
Alignment:
Q  164 aaaatgttacatgaacaccccttaat-catacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||| ||||||||| ||| || || | ||||||  ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  39631102 aaaatgatacatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaac 39631187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 41878407 - 41878492
Alignment:
Q  163 gaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||| | ||| |||||||||  ||| ||||||  ||  |||||||| |||||| ||| |||||||||||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcacaac 41878492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 43949900 - 43949815
Alignment:
Q  164 aaaatgttacatgaacaccccttaat-catacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||| ||||||||||||| || || | | ||||  ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  43949900 aaaatgatacatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaac 43949815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 41847971 - 41848057
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||| ||||| || ||  ||| |||||  ||| |||||| |||| ||||| |||||||||| ||||||||| ||||||    
T  41847971 ggaaaatgttacaagaacatccttttttcacacacctcattgtacaccccatgcattagagacattttggcaaattcatcgcacaac 41848057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 36004175 - 36004130
Alignment:
Q  203 atacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||| ||| |||||||||||||||| |||||| ||||||||||    
T  36004175 atacaccccatatattagggacattttgataaatttatctcacaac 36004130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 31680904 - 31680988
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||| | ||||||  ||| |||||||  | ||| |||||| | | ||||||||| |||||||||| |||||||||||||    
T  31680904 aaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttcatctcacaac 31680988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 36004204 - 36004168
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccc 198  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  36004204 ggaaaatgttacatgaataccctttaatcatacaccc 36004168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 45817 - 45733
Alignment:
Q  164 aaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||||||||| |||||||||||||||||| |||| |  |||||||| ||| ||||||||||||||||||||||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaac 45733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 35556 - 35470
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||||||| ||||||  ||||||||||||| |||| |||||| |||| ||||||||||| |||||||||||||||||||||    
T  35556 ggaaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctcacaac 35470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 684 - 771
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| || ||||||  ||| |||||| ||||||||||||| |||||||||| |||||||||||||    
T  684 aggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaac 771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 248
Target Start/End: Original strand, 11250 - 11337
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    |||||||||| |||||||||| | ||| |||||||||| ||| |||||| ||| ||||||||| |||||||||| |||||||||||||    
T  11250 aggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcacaac 11337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 112656 - 112741
Alignment:
Q  163 gaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||| ||| || ||||  | ||| ||||||  |||||||||||| |||||||||| |||||||||||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaac 112741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 14289 - 14202
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| |  ||||||| ||| |||| |  |||||||||||| ||||| |||| |||||||||||||    
T  14289 aggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaac 14202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 24617 - 24530
Alignment:
Q  161 aggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaac 248  Q
    ||||||||||||||||||||||| ||| |  ||||||| ||| |||| |  |||||||||||| ||||| |||| |||||||||||||    
T  24617 aggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaac 24530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 23521 - 23436
Alignment:
Q  162 ggaaaatgttacatgaacaccccttaatcatacaccctattatacaccacatgtattagggacattttggtaaattcatctcacaa 247  Q
    ||||||||||| |||||||||| ||| || ||||| | ||| |||| | |||||||||| || |||||||||| ||||||| ||||    
T  23521 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaa 23436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University