View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_10 (Length: 547)
Name: NF3820_high_10
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 19 - 537
Target Start/End: Complemental strand, 52649629 - 52649110
Alignment:
| Q |
19 |
caggtttctactatacacggattgcatactatgcttacaagggatacaaagggttctcattctctaacatacctcctgtatagttttctccagtgccatc |
118 |
Q |
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| T |
52649629 |
caggtttctactatacacggattgcatactatgcttacaagggatacaaagggttctcattctctaacatacctcctgtatagttttctccagtaccatc |
52649530 |
T |
|
| Q |
119 |
cttatgtatagatgttgatcttctatggttgcccttttgttttatttgttctgccttgcgtctaatgtacatttacattcactacaaatgctctgaacaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52649529 |
cttatgtatagatgttgatcttctatggttgcccttttgttttatttgttctgccttgcgtctaatgtacatttacattcactacaaatgctctgaacaa |
52649430 |
T |
|
| Q |
219 |
atatatttacaaattatagctgctaaaaatttatattgctatatagaatgaa-aatcaatcttcctgctttgaactctttttagcgtttttattagctga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
52649429 |
atatatttacaaattatagctgctaaaaatttatattgctatatagaatgaagaatcaatcttcctgctttgaactcttttcagtgtttttattagctga |
52649330 |
T |
|
| Q |
318 |
ttatgatggcccaatttgctttataactctataaggttatttcacttatggaatccaccccatcttcgtttccctgtagcaagtcaagtgcaacatcatg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52649329 |
ttatgatggcccaatttgctttataactctataaggtaatttcacttatggaatccaccccatcttcgtttccctgtagcaagtcaagtgcaacatcatg |
52649230 |
T |
|
| Q |
418 |
tctttgaattgaacacccaaaaacctgcattctactactgcatattgacactccgagcatgtgaatcatattccctggtaaggattgaatgtgcacattt |
517 |
Q |
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| T |
52649229 |
tctttgaattgaacacccaaaaacctgcattctactactgcatattgacactccgagcatgtgaatcatattccctggtaaggattgaatgtgcacattt |
52649130 |
T |
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| Q |
518 |
tgttgacttaaggaattcat |
537 |
Q |
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|||||| ||||||||||||| |
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| T |
52649129 |
tgttgagttaaggaattcat |
52649110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 16794321 - 16794397
Alignment:
| Q |
21 |
ggtttctactatacacggattgcatactatgcttacaagggatacaaagggttctcattctctaacatacctcctgt |
97 |
Q |
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||||||||||| || |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
16794321 |
ggtttctactacacgaggattgcatattatgcttacaaaggatacaaagggttctctttctctaacatacctcctgt |
16794397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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