View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_high_101 (Length: 272)

Name: NF3820_high_101
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_high_101
NF3820_high_101
[»] chr3 (9 HSPs)
chr3 (11-244)||(11125950-11126183)
chr3 (14-255)||(8869836-8870077)
chr3 (14-255)||(11141711-11141953)
chr3 (20-109)||(11194529-11194618)
chr3 (11-87)||(11143648-11143724)
chr3 (36-109)||(8866542-8866614)
chr3 (11-64)||(10894192-10894245)
chr3 (154-255)||(8866611-8866711)
chr3 (154-255)||(10894273-10894373)
[»] scaffold0003 (1 HSPs)
scaffold0003 (60-168)||(329653-329761)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 11126183 - 11125950
Alignment:
Q  11 ttattctctaccaaagtcaaaccatgagccaaagaaagccttgcatggccaagatgagaaagagaagaagaaatggaattcagaacgtccaacaaactct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11126183 ttattctctaccaaagtcaaaccatgagccaaagaaagccttgcatggccaagatgagaaagagaagaagaaatggaattcagaacgtccaacaaactct 11126084  T
Q  111 tggtatagttgagatatccttcaatggagtcgacctcccatcgactcattggataatcaatgtccacaagaagctttgcaaaaacattgttgatgatagg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11126083 tggtatagttgagatatccttcaatggagtcgacctcccatcgactcattggataatcaatgtccacaagaagctttgcaaaaacattgttgatgatagg 11125984  T
Q  211 aaaaaggccaaaacatctttgaatccatgataac 244  Q
    ||||||||||||||||||||||||||||||||||    
T  11125983 aaaaaggccaaaacatctttgaatccatgataac 11125950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 8869836 - 8870077
Alignment:
Q  14 ttctctaccaaagtcaaaccatgagccaaagaaagccttgcatggccaagatgagaaagagaagaagaaatggaattcagaacgtccaacaaactcttgg 113  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||    
T  8869836 ttctccaccaaagtcaaaccatgagccaaagaaagccttgaatggccaagatgagaaagagaagaagaaatggaattcagaagctccaacaaactcatgg 8869935  T
Q  114 tatagttgagatatccttcaatggagtcgacctcccatcgactcattggataatcaatgtccacaagaagctttgcaaaaacattgttgatgataggaaa 213  Q
    |||||||||||||  ||||||| || || || | ||||  | ||||||||||||||||||| | || ||| ||||||||||| |||||||||| ||| ||    
T  8869936 tatagttgagataaacttcaattgaatcaacgttccatttagtcattggataatcaatgtcgataacaagttttgcaaaaaccttgttgatgagaggcaa 8870035  T
Q  214 aaggccaaaacatctttgaatccatgataacgataagatttc 255  Q
    ||| |||||||||| ||||| |||||||||||||||||||||    
T  8870036 aagaccaaaacatccttgaaaccatgataacgataagatttc 8870077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 11141953 - 11141711
Alignment:
Q  14 ttctctaccaaagtcaaaccatgagccaaagaaagccttgcatggccaagatgagaaagagaagaagaaatggaattcagaacgtccaacaaactcttgg 113  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||    
T  11141953 ttctccaccaaagtcaaaccatgagccaaagaaagccttgaatggccaagatgagaaagagaagaagaaatgaaattcagaacctccaacaaactcatgg 11141854  T
Q  114 tatagttgagatatccttcaatggagtcgacctcccatcgactcattggataatcaatgtccacaagaagctttgc-aaaaacattgttgatgataggaa 212  Q
    |||||||||||||  ||||||| || || || | ||||  | ||||||||||||||||||||| || ||| ||||| |||||| |||||||||| ||| |    
T  11141853 tatagttgagataaacttcaattgaatcaacgttccatttagtcattggataatcaatgtccataacaagttttgcaaaaaaccttgttgatgagaggca 11141754  T
Q  213 aaaggccaaaacatctttgaatccatgataacgataagatttc 255  Q
    |||| |||||||||| ||||| |||||||||||||||||||||    
T  11141753 aaagaccaaaacatccttgaaaccatgataacgataagatttc 11141711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 11194529 - 11194618
Alignment:
Q  20 accaaagtcaaaccatgagccaaagaaagccttgcatggccaagatgagaaagagaagaagaaatggaattcagaacgtccaacaaactc 109  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||    
T  11194529 accaaagtcaaaccatgagccaaagaaacccttgcatggcctagatgagaaagacaagaagaaatggaattcagaacctccaacaaactc 11194618  T

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Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 11143724 - 11143648
Alignment:
Q  11 ttattctctaccaaagtcaaaccatgagccaaagaaagccttgcatggccaagatgagaaagagaagaagaaatgga 87  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  11143724 ttattctccaccaaagtcaaaccatgagctaaagaaagccttgcatggccaagatgagaaagtgaagaagaaatgga 11143648  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 8866542 - 8866614
Alignment:
Q  36 gagccaaagaaagccttgcatggccaagatgagaaagagaagaagaaatggaattcagaacgtccaacaaactc 109  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||    
T  8866542 gagccaaagaa-gccttgaatggccaagatgagaaagtgaagaagaaatggaattcaaaaccttcaacaaactc 8866614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 10894192 - 10894245
Alignment:
Q  11 ttattctctaccaaagtcaaaccatgagccaaagaaagccttgcatggccaaga 64  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  10894192 ttattctccaccaaagtcaaaccatgagccaaagaaagccttgcatggcaaaga 10894245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 255
Target Start/End: Original strand, 8866611 - 8866711
Alignment:
Q  154 actcattggataatcaatgtccacaagaagctttgcaaaaacattgttgatgataggaaaaaggccaaaacatctttgaatccatgataacgataagatt 253  Q
    |||||||||||||||| ||||||||||||||||  | || || |||||||||||||  ||||||| | |||||  |||||  ||||||||| ||||||||    
T  8866611 actcattggataatca-tgtccacaagaagcttcacgaagaccttgttgatgatagacaaaaggctagaacattcttgaaagcatgataacaataagatt 8866709  T
Q  254 tc 255  Q
    ||    
T  8866710 tc 8866711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 255
Target Start/End: Original strand, 10894273 - 10894373
Alignment:
Q  154 actcattggataatcaatgtccacaagaagctttgcaaaaacattgttgatgataggaaaaaggccaaaacatctttgaatccatgataacgataagatt 253  Q
    |||||||||||||| || |||||||||||||||  || | || || ||||||||||  ||||||| | ||||| ||||||  ||||||||| ||||||||    
T  10894273 actcattggataat-aacgtccacaagaagcttcacagagaccttattgatgatagacaaaaggctagaacatttttgaaagcatgataacaataagatt 10894371  T
Q  254 tc 255  Q
    ||    
T  10894372 tc 10894373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 329761 - 329653
Alignment:
Q  60 caagatgagaaagagaagaagaaatggaattcagaacgtccaacaaactcttggtatagttgagatatccttcaatggagtcgacctcccatcgactcat 159  Q
    ||||||||||||||||||||||||| ||||| | ||  || ||||||| |    | |||||||||||  |||||||||| || |||||||||  ||||||    
T  329761 caagatgagaaagagaagaagaaattgaattgaaaagctctaacaaacacaaactgtagttgagatactcttcaatggaatcaacctcccatttactcat 329662  T
Q  160 tggataatc 168  Q
    |||||||||    
T  329661 tggataatc 329653  T

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