View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_103 (Length: 270)
Name: NF3820_high_103
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_103 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 6 - 270
Target Start/End: Complemental strand, 46621846 - 46621582
Alignment:
| Q |
6 |
cataggcctcatttggagacacataacaaggataagattatttgtatataataatagtataatcgtataaatattatacaaaaaagatgtttccacatat |
105 |
Q |
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| T |
46621846 |
catagacctcatttggagacacatatcaaggataagattatttgtatataataatagtataatcgtataaatattatacaaataagatgtttccacatat |
46621747 |
T |
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| Q |
106 |
acggaaaaacaaaactataaggaattgtaagactttgtattaaacctaaataacaagaatagatatacaattaagtgcaataataaagcggacaaataac |
205 |
Q |
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| T |
46621746 |
acggaaaaacaaaactataaggaattgtaagactttgtattaaacctaaataacaagaatagatatacaattaagtgcaataataaagcggacaaataac |
46621647 |
T |
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| Q |
206 |
atggtaattccgttgtaaccagaatctagattgaggtggcaaaacataagttacataaaggagtc |
270 |
Q |
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| T |
46621646 |
atggtaattccgttgtaaccagaatctagattgaggtggcaaaacataagttacataaaggagtc |
46621582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 46640822 - 46640764
Alignment:
| Q |
82 |
tacaaaaaagatgtttccacatatacggaaaaacaaaactataaggaattgtaagactt |
140 |
Q |
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| T |
46640822 |
tacaaataagatgttttcacacatacgtaaaaacaaaaccgtaaggaattgcaagactt |
46640764 |
T |
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