View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_105 (Length: 266)
Name: NF3820_high_105
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_105 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 49163023 - 49162787
Alignment:
| Q |
14 |
gcagagatggtaagaaaggaaatgatggaccaaggggtgaagaaagtgcctggctgtagttggattgagataagaaatgtggtgactgcatttgtatcag |
113 |
Q |
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| T |
49163023 |
gcagagatggtaagaaaggaaatgatggaccaaggggtgaagaaagtgcctggctgtagttggattgagataagaaatgtggtgactgcatttgtatcag |
49162924 |
T |
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| Q |
114 |
gaaataatttatatccttgcatggctgatatatctaagatactatacttccttgaattagaaatgagacacacacgacccattcattttgatattgaatg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
49162923 |
gaaataatttatatccttgcatggctgatatatctaagatactatacttccttgaattagaaatgagacacacacggcccattaattttgatattgaatg |
49162824 |
T |
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| Q |
214 |
atcttttataaaccagtgatgcatttatgtgaaataa |
250 |
Q |
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| T |
49162823 |
atcttttataaaccagagatgcatttatgtgaaataa |
49162787 |
T |
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