View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_11 (Length: 543)
Name: NF3820_high_11
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 31996940 - 31997465
Alignment:
| Q |
1 |
tatattgttttacaatgactattttttgcaaactattttctgtatattatttcttacttactcaaatctctctgatattgatatgttgttatttcttgtg |
100 |
Q |
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| T |
31996940 |
tatattgttttacaatgactattttttgcaaactattttctgtatattatttcttacatactcaaatctctctgatattgatatgttgttatttcttttg |
31997039 |
T |
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| Q |
101 |
ctagagttattttctgattaaggcaagtttagaccttacagtatgcacaacaattattcggtatacaatatcgtaagtggatatagacagtaacatggtt |
200 |
Q |
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| T |
31997040 |
ctaga-ttactttctgattaaggcaagtttagaccttacagtatgcacagcaattattcggtatacaaaatcgtaagtggatatagacagtaacatggtt |
31997138 |
T |
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| Q |
201 |
gcaaacttccctcaaacacagacttggtgctcagttgctactaatcaagtattgttaatcattttgcgacttagaatttgttgtattgcttcatttgctc |
300 |
Q |
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| T |
31997139 |
gcaaacttccctcaaacacagacttggtgctcagttgctactaatcgagtattgttaatcattttgcgacttagaatttgttgtattgcttcatttgctc |
31997238 |
T |
|
| Q |
301 |
gcatgttcatcgttgaaaatgttattatgtgaattagaagagagagttaatacttgaatcatgttattatgttttcgttatgggagaactttaaaaatat |
400 |
Q |
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| T |
31997239 |
gcatgttcatgattgaaaatgttattatgtgaattagaagagagagttaatacttgaatcatgttattatgttttcgttatgggagaactttaaaaatat |
31997338 |
T |
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| Q |
401 |
caagacctctcttggatcattttggttttgacaggatgcttctcttggagaaggtgcacacctggaagtgaaactgataatcctatttcctagctttaaa |
500 |
Q |
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| T |
31997339 |
caagacctctctttgatcattttggttttgacaggatgcttctcttggagaaggtgcatacctggaagtgaaactgataatcatgtttcctagctttaaa |
31997438 |
T |
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| Q |
501 |
ttgaactgtttatttcacttagttttt |
527 |
Q |
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| T |
31997439 |
ttgaactgtttatttcacttagttttt |
31997465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 400
Target Start/End: Original strand, 15843681 - 15843746
Alignment:
| Q |
335 |
tagaagagagagttaatacttgaatcatgttattatgttttcgttatgggagaactttaaaaatat |
400 |
Q |
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| T |
15843681 |
tagaagggatagttaatgcttgaatcatgttattatattttcattatgggagaacttttaaaatat |
15843746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 24011575 - 24011622
Alignment:
| Q |
99 |
tgctagagttattttctgattaaggcaagtttagaccttacagtatgca |
147 |
Q |
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| T |
24011575 |
tgctagagttattt-ctgattaaggcaagtttagactttagagaatgca |
24011622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 456
Target Start/End: Complemental strand, 45141630 - 45141594
Alignment:
| Q |
420 |
ttttggttttgacaggatgcttctcttggagaaggtg |
456 |
Q |
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| T |
45141630 |
ttttggttttggcaggttgcttctcttggagaaggtg |
45141594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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