View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_117 (Length: 253)
Name: NF3820_high_117
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_117 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 33413533 - 33413294
Alignment:
| Q |
11 |
cataggccattgcatacatcatgtttacaattagaagaacaatggcactgaatatgataggtcttagacacaatcagttcgatcacacactaaaataaat |
110 |
Q |
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| T |
33413533 |
cataggccattgcatacatcatgtttacaattagaagaacaatggcactgaatatgataggtcttagacacaatcagttcgatcacacactaaaataaat |
33413434 |
T |
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| Q |
111 |
agaagcaaaaacatgtgcaatagtcattgatccgttgatgacaccacaaacacttgcagcagctccaaggttcaatgagtagttggtcctaggtacaatg |
210 |
Q |
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| T |
33413433 |
agaagcaaaaacatgtgcaatagtcattgatccgttgatgacaccacaaacacttgcagcagctccaaggttcaatgagtagttggtcttaggtacaatg |
33413334 |
T |
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| Q |
211 |
ctgtaagtagtgatgaccatatacaaaaatgtgcttgccattc |
253 |
Q |
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| T |
33413333 |
ttgtaagtag---tgaccatatacaaaaatgtgcttgccattc |
33413294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 33420677 - 33420439
Alignment:
| Q |
12 |
ataggccattgcatacatcatgtttacaattagaagaacaatggcactgaatatgataggtcttagacacaatcagttcgatcacacactaaaataaata |
111 |
Q |
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| T |
33420677 |
ataggccattgcatacttgatgtttacaattagatgaacaataacactgaatatgataagtcttagacacgatcggttcgaccacatactgaaataaaca |
33420578 |
T |
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| Q |
112 |
gaagcaaaaacatgtgcaatagtcattgatccgttgatgacaccacaaacacttgcagcagctccaaggttcaatgagtagtt---ggtcctaggtacaa |
208 |
Q |
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| T |
33420577 |
gaagcaaaaacttgtgcaatagccattgatccgacgacaacaccacaaacacttgcagcagctccaaggttcaatgagtagtttccggtcataggtacaa |
33420478 |
T |
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| Q |
209 |
tgctgtaagtagtgatgaccatatacaaaaatgtgcttgcca |
250 |
Q |
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| T |
33420477 |
tgatgtaagtag---cgaccatatacaaaaatgtgcttgcca |
33420439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 28812008 - 28812247
Alignment:
| Q |
11 |
cataggccattgcatacatcatgtttacaattagaagaacaatggcactgaatatgataggtcttagacacaatcagttcgatcacacactaaaataaat |
110 |
Q |
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||||||||| ||||||||| |||||| |||| | ||||||||||| ||||||||||| |||||||||| || ||| |||||| ||| |||| ||||||| |
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| T |
28812008 |
cataggccaatgcatacatgatgtttccaatcataagaacaatggtactgaatatgagaggtcttagatacgatcggttcgaccacgcactgaaataaac |
28812107 |
T |
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| Q |
111 |
agaagcaaaaacatgtgcaatagtcattgatccgttgatgacaccacaaacacttgcagcagctccaaggttcaatgagtagttg---gtcctaggtaca |
207 |
Q |
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| T |
28812108 |
agaagcaaaaacctgtgcaacagccattgatccgatgacgacaccgcaaacacttgcagcagctccaaggttcaatgagtaattgtcagccgtaggtaca |
28812207 |
T |
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| Q |
208 |
atgctgtaagtagtgatgaccatatacaaaaatgtgcttgcca |
250 |
Q |
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| T |
28812208 |
acgatgtaagta---ttgaccatatacaaaaatgtgcttgcca |
28812247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 33491796 - 33491727
Alignment:
| Q |
178 |
aggttcaatgagtagttg---gtcctaggtacaatgctgtaagtagtgatgaccatatacaaaaatgtgcttg |
247 |
Q |
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| T |
33491796 |
aggttcaatgagtagttgtcggtcctaggtacaatgttgtaaatagtga---ccatatacaaaaatgtgcttg |
33491727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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