View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_119 (Length: 252)
Name: NF3820_high_119
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_119 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 18513501 - 18513266
Alignment:
| Q |
1 |
acatgcaatttttctaagcttatgctacaattaatagttcaataccatgcattgatagattgcaccatttttactgcacagatggatgcacataatcaat |
100 |
Q |
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| T |
18513501 |
acatgcaatttttctaagcttatgctacaattaatagttcaataccatgcattgatagattgcaccatttttactgcacagatggatgcacataatcaat |
18513402 |
T |
|
| Q |
101 |
agttctattcctgtacacatgcacataaatgcttgtaatttatctgctcttacgtttagcttacataaattagtgatatacaatgcaaaagcaaacattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18513401 |
agttctattcctgtacacatgcacataaatgcttgtaatttatctgctcttacgtttagcttacataaattagtgatatacaatgcaaaatcaaacattt |
18513302 |
T |
|
| Q |
201 |
aggagtttatagagaataaattatagagcatatagc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
18513301 |
aggagtttatagagaataaattatagagcatatagc |
18513266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 14516139 - 14516376
Alignment:
| Q |
1 |
acatgcaatttttctaagcttatgctacaattaatagttc-aataccatgcattgatagattgcaccatttttactgcacagatggatgcacataatcaa |
99 |
Q |
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|||||||| |||||||||||||| | |||||||||||||| ||||||||| ||||||||||||| | |||||||| |||||||||||||||||||| || |
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| T |
14516139 |
acatgcaagttttctaagcttataccacaattaatagttctaataccatgg-ttgatagattgcagcctttttacttcacagatggatgcacataattaa |
14516237 |
T |
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| Q |
100 |
tagttctattcctgtacacatgcacataaatgcttgtaattta--tctgctcttacgtttagcttacataaattagtgatatacaatgcaaaagcaaaca |
197 |
Q |
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| T |
14516238 |
tagttttattcttgtacacatgcacataaatgcttgtaatttagggctgctcttatgtttagcttacataaattagtggcatacaatgcaaaatcaaaca |
14516337 |
T |
|
| Q |
198 |
tttaggagtttatagagaataaattatagagcatatagc |
236 |
Q |
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| T |
14516338 |
tataggaatctacagagaatagattatagagcatttagc |
14516376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 13112209 - 13112370
Alignment:
| Q |
1 |
acatgcaatttttctaagcttatgctacaattaatagttcaataccatgcattgatagattgcaccatttttactgcacagatggatgcacataatcaat |
100 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||| || |||||| ||| ||| |||||||||| || || | ||| |
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| T |
13112209 |
acattcaatttttctaagcttatgccataattaatagttcaataccatccagtgataggttgaaccctttttactgccca------------tagttaat |
13112296 |
T |
|
| Q |
101 |
agttctattcctgtacacatgcacataaatgcttgtaatttatctgctcttacgtttagcttacataaattagtg |
175 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| |
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| T |
13112297 |
agttatattcctgtatacatgcacataaatgcttgtaatttacctgctctta-ttttaccttacataaattagtg |
13112370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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