View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_high_129 (Length: 249)

Name: NF3820_high_129
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_high_129
NF3820_high_129
[»] chr8 (1 HSPs)
chr8 (20-235)||(31119157-31119372)
[»] chr7 (1 HSPs)
chr7 (186-215)||(11815718-11815747)
[»] chr6 (2 HSPs)
chr6 (187-215)||(19294303-19294331)
chr6 (187-215)||(34013455-34013483)
[»] chr4 (1 HSPs)
chr4 (187-215)||(55680655-55680683)
[»] chr2 (5 HSPs)
chr2 (187-215)||(4748275-4748303)
chr2 (187-215)||(9929549-9929577)
chr2 (187-215)||(26575985-26576013)
chr2 (187-215)||(32201039-32201067)
chr2 (187-215)||(41848937-41848965)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 31119157 - 31119372
Alignment:
Q  20 gtcgggcatctggacatgcctttgagcaaaagtgcctgtgcaacagaagtttataaagatacacaatgttcgtttatgcagtaagacaattagtggttta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31119157 gtcgggcatctggacatgcctttgagcaaaagtgcctgtgcaacagaagtttataaagatacacaatgttcgtttatgcagtaagacaaatagtggttta 31119256  T
Q  120 ttcaaattcctctgcgcaactgcgctatagttgctatatgataatattctgtattagtggtgtccaagtgtcctatattttttacattagcggtgtttca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31119257 ttcaaattcctctgcgcaactgcgctatagttgctatatgataatattctgtattagtggtgtccaagtgtcctatattttttacattagcggtgtttca 31119356  T
Q  220 gtgttgtgtcacaggt 235  Q
    ||||||||||||||||    
T  31119357 gtgttgtgtcacaggt 31119372  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 11815718 - 11815747
Alignment:
Q  186 agtgtcctatattttttacattagcggtgt 215  Q
    ||||||||||||||||||||||||||||||    
T  11815718 agtgtcctatattttttacattagcggtgt 11815747  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 19294331 - 19294303
Alignment:
Q  187 gtgtcctatattttttacattagcggtgt 215  Q
    |||||||||||||||||||||||||||||    
T  19294331 gtgtcctatattttttacattagcggtgt 19294303  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 34013483 - 34013455
Alignment:
Q  187 gtgtcctatattttttacattagcggtgt 215  Q
    |||||||||||||||||||||||||||||    
T  34013483 gtgtcctatattttttacattagcggtgt 34013455  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 55680683 - 55680655
Alignment:
Q  187 gtgtcctatattttttacattagcggtgt 215  Q
    |||||||||||||||||||||||||||||    
T  55680683 gtgtcctatattttttacattagcggtgt 55680655  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Original strand, 4748275 - 4748303
Alignment:
Q  187 gtgtcctatattttttacattagcggtgt 215  Q
    |||||||||||||||||||||||||||||    
T  4748275 gtgtcctatattttttacattagcggtgt 4748303  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 9929577 - 9929549
Alignment:
Q  187 gtgtcctatattttttacattagcggtgt 215  Q
    |||||||||||||||||||||||||||||    
T  9929577 gtgtcctatattttttacattagcggtgt 9929549  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 26576013 - 26575985
Alignment:
Q  187 gtgtcctatattttttacattagcggtgt 215  Q
    |||||||||||||||||||||||||||||    
T  26576013 gtgtcctatattttttacattagcggtgt 26575985  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Original strand, 32201039 - 32201067
Alignment:
Q  187 gtgtcctatattttttacattagcggtgt 215  Q
    |||||||||||||||||||||||||||||    
T  32201039 gtgtcctatattttttacattagcggtgt 32201067  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 41848965 - 41848937
Alignment:
Q  187 gtgtcctatattttttacattagcggtgt 215  Q
    |||||||||||||||||||||||||||||    
T  41848965 gtgtcctatattttttacattagcggtgt 41848937  T

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