View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_133 (Length: 249)
Name: NF3820_high_133
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_133 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 83 - 236
Target Start/End: Complemental strand, 24988318 - 24988165
Alignment:
| Q |
83 |
caaggaaatttcctccctcctccttctataaagggaaaccgtagaacgttacattccatttaatttcactttgtgcataaacataattaatatggcagca |
182 |
Q |
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| T |
24988318 |
caaggaaatttcctccctcctccttctataaagggaaaccatagaacgttacattccatttaatttcactttgtgcataaacataattaatatggcagca |
24988219 |
T |
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| Q |
183 |
tttgatttcaacgtgttttcgttactcttcattttttctattattaccattacc |
236 |
Q |
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| T |
24988218 |
tttgatttcaacgtgttttcgttactcttcattttttctattattaccattacc |
24988165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 24988400 - 24988371
Alignment:
| Q |
1 |
tacgtaacttcctaaataatcgaatccata |
30 |
Q |
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| T |
24988400 |
tacgtaacttcctaaataatcgaatccata |
24988371 |
T |
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