View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3820_high_138 (Length: 247)

Name: NF3820_high_138
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3820_high_138
NF3820_high_138
[»] chr5 (1 HSPs)
chr5 (1-93)||(16728429-16728521)
[»] chr2 (5 HSPs)
chr2 (1-93)||(31621397-31621487)
chr2 (1-93)||(36667077-36667169)
chr2 (162-232)||(31621253-31621324)
chr2 (162-224)||(36666946-36667008)
chr2 (185-223)||(40893956-40893994)
[»] chr1 (5 HSPs)
chr1 (1-93)||(26530188-26530280)
chr1 (1-93)||(36574643-36574733)
chr1 (162-224)||(26530352-26530414)
chr1 (164-232)||(36574808-36574877)
chr1 (1-58)||(49918882-49918939)


Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 16728429 - 16728521
Alignment:
Q  1 acttcagccacatttgaaataagcaaaaatctcaactcatgcctgaattgcatgatgactattgctgtaacaacagaaaggagataaatctgt 93  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  16728429 acttcagccacatttgaaataagcaaaaatctcaacccatgcctgaattgcatgatgactattgctgtaacaacagaaagaagacaaatctgt 16728521  T

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Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 31621487 - 31621397
Alignment:
Q  1 acttcagccacatttgaaataagcaaaaatctcaactcatgcctgaattgcatgatgactattgctgtaacaacagaaaggagataaatctgt 93  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||| ||||||||    
T  31621487 acttcagccacatttgaaataagcaaaaatctcaacccatgcctgaattgcatgatga--attgctgtaacaacagaaaggagacaaatctgt 31621397  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 36667169 - 36667077
Alignment:
Q  1 acttcagccacatttgaaataagcaaaaatctcaactcatgcctgaattgcatgatgactattgctgtaacaacagaaaggagataaatctgt 93  Q
    |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||    
T  36667169 acttcaaccacacttgaaataagcaaaaatctcaacccatgcctgaattgcatgatgactattgttgtaaaaacagaaaggagacaaatctgt 36667077  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 31621324 - 31621253
Alignment:
Q  162 acaacaagtaaacctccaatcctaaattcaatttagagatgaagatgggtgagtgaatg-ggggacggtagt 232  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  31621324 acaacaagtaaacctccaatccgaaattcaatttagaaatgaagatgggtgagtgaatggggggacggtagt 31621253  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 36667008 - 36666946
Alignment:
Q  162 acaacaagtaaacctccaatcctaaattcaatttagagatgaagatgggtgagtgaatggggg 224  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||    
T  36667008 acaacaagtaaacctccaatccgaaattcaatttagaaatgaagatgagtgagtgaatggggg 36666946  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 40893994 - 40893956
Alignment:
Q  185 aaattcaatttagagatgaagatgggtgagtgaatgggg 223  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  40893994 aaattcaatttaaaaatgaagatgggtgagtgaatgggg 40893956  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 26530188 - 26530280
Alignment:
Q  1 acttcagccacatttgaaataagcaaaaatctcaactcatgcctgaattgcatgatgactattgctgtaacaacagaaaggagataaatctgt 93  Q
    |||||||||||| ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  26530188 acttcagccacacttgaaataagcaaaaatctcagcccatgcatgaattgcatgatgactattgctgtaacaatagaaaggagacaaatctgt 26530280  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 36574643 - 36574733
Alignment:
Q  1 acttcagccacatttgaaataagcaaaaatctcaactcatgcctgaattgcatgatgactattgctgtaacaacagaaaggagataaatctgt 93  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||  |||| ||||||||||||||||||| ||||||||    
T  36574643 acttcagccacatttgaaataagtaaaaatctcaacccatgtctgaattgcatgatga--attgttgtaacaacagaaaggagacaaatctgt 36574733  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 26530352 - 26530414
Alignment:
Q  162 acaacaagtaaacctccaatcctaaattcaatttagagatgaagatgggtgagtgaatggggg 224  Q
    |||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  26530352 acaacaagcaaacctccaatccgaaattcaatttagaaatgaagatgggtgagtgaatggggg 26530414  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 36574808 - 36574877
Alignment:
Q  164 aacaagtaaacctccaatcctaaattcaatttagagatgaagatgggtgagtgaat-gggggacggtagt 232  Q
    |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  36574808 aacaagtaaacctctaatccgaaattcaatttagaaatgaagatgggtgagtgaatggggggacggtagt 36574877  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 49918882 - 49918939
Alignment:
Q  1 acttcagccacatttgaaataagcaaaaatctcaactcatgcctgaattgcatgatga 58  Q
    |||||| ||||| ||||||||||||||||||||||  ||||| |||||||||| ||||    
T  49918882 acttcaaccacacttgaaataagcaaaaatctcaaaccatgcttgaattgcataatga 49918939  T

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