View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_139 (Length: 247)
Name: NF3820_high_139
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_139 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 6758144 - 6758376
Alignment:
| Q |
16 |
ctttcttagaaaatgctggatctgttgatgcattgaatgacctggaaaatttatttaaagctctggatgaatcaaaacgccttgattaggtgatttttga |
115 |
Q |
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| T |
6758144 |
ctttcttagaaaatgctggatctgttgatgcattgaatgacctggaaattttatttaaagctctggatgaatcaaaacgccttgattaggtgatttttga |
6758243 |
T |
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| Q |
116 |
cttgagtcttgccaggggtcttgattattatactggagttatatttgaagctgttcttaaa-ggggtgctcaggtaattctcgtgtcttttatcttctct |
214 |
Q |
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| T |
6758244 |
cttgagtcttgccaggggtcttgattattatactggagttatatttgaagctgttcttaaagggggtgctcaggtaattctcgtgtcttttatcttctct |
6758343 |
T |
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| Q |
215 |
ccatcctgaaatgtttcttctttagttcccctc |
247 |
Q |
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| T |
6758344 |
ccatcctgaaatgtttcttctttagttcccctc |
6758376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 25464910 - 25464682
Alignment:
| Q |
16 |
ctttcttagaaaatgctggatctgttgatgcattgaatgacctggaaaatttatttaaagctctggatgaatcaaaacgccttgattaggtgatttttga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| || | |||||||||| ||||||||||||||||| |||| | ||||| |
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| T |
25464910 |
ctttcttagaaaatgctggatctgttgatgcattgaatgacctggaaattttgttcagagctctggataaatcaaaacgccttgataaggttgtatttga |
25464811 |
T |
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| Q |
116 |
cttgagtcttgccaggggtcttgattattatactggagttatatttgaagctgttcttaaa-ggggtgctcaggtaattctcgtgtcttttatcttctct |
214 |
Q |
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| T |
25464810 |
cttgagtcttgccaggggtcttgattattatactggagttatttttgaagctgtttttaaagggggtgctcaggtaattctcgcgtcttttatgttcttt |
25464711 |
T |
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| Q |
215 |
ccatcctgaaatgtttcttctttagttcc |
243 |
Q |
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| T |
25464710 |
tcattctgaaatgtttcttgttaagttcc |
25464682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 25475644 - 25475423
Alignment:
| Q |
16 |
ctttcttagaaaa-tgctggatctgttgatgcattgaatgacctggaaaatttatttaaagctctggatgaatcaaaacgccttgattaggtgatttttg |
114 |
Q |
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||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
25475644 |
ctttcttagaaaaatgctggatctgttgatgcattaaattacctggaaattttatttaaagctctggatgaatcaaaacgccttgataaggtggtttttg |
25475545 |
T |
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| Q |
115 |
acttgagtcttgccaggggtcttgattattatactggagttatatttgaagctgttcttaaa-ggggtgctcaggtaattctcgtgtcttttatcttctc |
213 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||| | ||| |||||| | |||||||||||||||||| ||||| |
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| T |
25475544 |
acttgagtcttgccagaggtcttgattattacactggagttatatttgaagctgttttcaaagggggtgttgaggtaattctcgtgtctt-----ttctc |
25475450 |
T |
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| Q |
214 |
tccatcctgaaatgtttcttctttagt |
240 |
Q |
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||||| ||||||||||||||| ||||| |
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| T |
25475449 |
tccattctgaaatgtttcttcattagt |
25475423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 40087321 - 40087096
Alignment:
| Q |
16 |
ctttcttagaaaatgctggatctgttgatgcattgaatgacctggaaaatttatttaaagctctggatgaatcaaaacgccttgattaggtgatttttga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | ||||| ||||||||| ||||| ||||||| |
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| T |
40087321 |
ctttcttagaaaatgctggatctgttgatgcattgaatgacctggaaattctatttaaagctctggataattcaaatcgccttgataaggtggtttttga |
40087222 |
T |
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| Q |
116 |
cttgagtcttgccaggggtcttgattattatactggagttatatttgaagctgttcttaaa-ggggtgctcaggtaattctcgtgtcttttatcttctct |
214 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |||||| ||||||||||||||||| |
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| T |
40087221 |
cttgagtcttgccagaggtcttgattattatactggagttatatttgaagctgttttcaaagggggtgctcaggtgattctcatgtcttttatcttctct |
40087122 |
T |
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| Q |
215 |
ccatcctgaaatgtttcttctttagt |
240 |
Q |
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|||| || ||||||||||||| |||| |
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| T |
40087121 |
ccattctaaaatgtttcttctgtagt |
40087096 |
T |
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