View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_140 (Length: 247)
Name: NF3820_high_140
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_140 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 2941320 - 2941219
Alignment:
| Q |
99 |
cttgattctagggtttggtttgcctcaagcttataaataggttcaatcccatctcataacatcaccaagctctacttttctgctgttgcaatacctaaat |
198 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
2941320 |
cttgattctagggtttggttcgcctcaagcttataaataggttcaactccatctcataacatcaccaagctctacttttctgctgctgcaatacctacat |
2941221 |
T |
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| Q |
199 |
at |
200 |
Q |
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|| |
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| T |
2941220 |
at |
2941219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 2946101 - 2945988
Alignment:
| Q |
99 |
cttgattctagggtttggtttgcctcaagcttataaataggttcaatcccatctcataacatcaccaagctctacttttctgctgttgcaatacctaaat |
198 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||| |||||||||| | || ||||| || |
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| T |
2946101 |
cttgattctagggtttggtttgcctcaagcgtataa-taggttcaaccccatctcataacatcatcaagctctaattttctgctgctacagtaccttcat |
2946003 |
T |
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| Q |
199 |
atcctcaccctcaaa |
213 |
Q |
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| T |
2946002 |
atcctcaccttcaaa |
2945988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 2941407 - 2941347
Alignment:
| Q |
12 |
tcatcaatccttatccatttctaaattttttccttctatcgattctcacctccccattagc |
72 |
Q |
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| T |
2941407 |
tcatcaatccttatccatttctaaattttttccttctatcgattctcacctacccattagc |
2941347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 2945684 - 2945603
Alignment:
| Q |
99 |
cttgattctagggtttggtttgcctcaagcttataaataggttcaatcccatctcataacatcaccaagctctacttttctg |
180 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| ||| |||| |||||||| |
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| T |
2945684 |
cttgattttagggtttgatttgcctcaagcttataaataggttcaaccccatctcataatatcatcaaactcttcttttctg |
2945603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 2946530 - 2946457
Alignment:
| Q |
99 |
cttgattctagggtttggtttgcctcaagcttataaataggttc-aatcccatctcataacatcaccaagctct |
171 |
Q |
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| T |
2946530 |
cttgattctagggcttggtttgcctcaagcttataaataggttcaaaccccatctcataacatcatcaagctct |
2946457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 2940747 - 2940663
Alignment:
| Q |
99 |
cttgattctagggtttggtttgcctcaagcttataaataggttcaatcccatctcataacatcaccaagctctacttttctgctg |
183 |
Q |
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||||||| || |||||| |||||||||||||||||||||||||||| | | |||||||| ||| ||| |||| ||||||||||| |
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| T |
2940747 |
cttgattataaggtttgatttgcctcaagcttataaataggttcaacctcgtctcataatttcatcaaactcttcttttctgctg |
2940663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 2946186 - 2946131
Alignment:
| Q |
15 |
tcaatccttat-ccatttctaaattttttccttctatcgattctcacctccccatt |
69 |
Q |
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| T |
2946186 |
tcaatccttattccttttctaaatcttttccttctatcgattctcacctccccatt |
2946131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 21192358 - 21192436
Alignment:
| Q |
99 |
cttgattctagggtttggtttgcctcaagcttataaataggttcaatcccatctcataacatcaccaagctctactttt |
177 |
Q |
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| T |
21192358 |
cttgattctagggtttggttttcctcaagcttataaataggttcaaccccatctcataacatcaccaagctctactttt |
21192436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 21192791 - 21192848
Alignment:
| Q |
125 |
aagcttataaataggttcaatcccatctcataacatcaccaagctctacttttctgct |
182 |
Q |
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|||||||||||||||| ||| |||||||||||| ||| ||| |||| |||||||||| |
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| T |
21192791 |
aagcttataaataggtacaaccccatctcataatttcatcaaactcttcttttctgct |
21192848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 21192291 - 21192327
Alignment:
| Q |
33 |
taaattttttccttctatcgattctcacctccccatt |
69 |
Q |
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|||||||||||| | |||||||||||||||||||||| |
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| T |
21192291 |
taaattttttccctttatcgattctcacctccccatt |
21192327 |
T |
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