View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_144 (Length: 245)
Name: NF3820_high_144
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_144 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 31996536 - 31996775
Alignment:
| Q |
6 |
cacagagataaagccagagtggttgctggagatagccccccactgttacgatcccaaggatgttggagactcgagttccaagaaattgcctcgtggatgt |
105 |
Q |
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| T |
31996536 |
cacagagataaagccagagtggttgctggagatagccccccactgttacgatcccaaggatgttggagactcgagttccaagaaaatgcctcgtggatgt |
31996635 |
T |
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| Q |
106 |
ggacttgcactgtaggacatgtagctggcacattatttgagaaatattggttgttctttctggttctgtaaaagacttgaattttaaatttgtttataaa |
205 |
Q |
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| T |
31996636 |
ggacttgcactgtaggacatgtagctggcacattatttgagaaatattggttgttctttctggttctgtaaaagacttgaattttaaatttgtttataaa |
31996735 |
T |
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| Q |
206 |
attccttttttacctttgttatttgtgattaatttcatac |
245 |
Q |
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| T |
31996736 |
attccttttttacctttgttatttgtgattaatttcatac |
31996775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 31997874 - 31997934
Alignment:
| Q |
54 |
cgatcccaaggatgttggagactcgagttccaagaaattgcctcgtggatgtggacttgca |
114 |
Q |
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| T |
31997874 |
cgatcccaaggacgtcgaatactcgagttccaagaaaatgcctcgtggacgtggacttgca |
31997934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 24010989 - 24011097
Alignment:
| Q |
6 |
cacagagataaagccagagtggttgctggagatagccccccactgttacgatcccaaggatgttggagactcgagttccaagaaattgcctcgtggatgt |
105 |
Q |
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| T |
24010989 |
cacagagataaagccagagtggttgctggagatagcccccaatttttacaatcctaaggatgttgaagacttgagttccaagaaaatgccccgtggaagt |
24011088 |
T |
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| Q |
106 |
ggacttgca |
114 |
Q |
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| T |
24011089 |
ggacttgca |
24011097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 7290693 - 7290762
Alignment:
| Q |
6 |
cacagagataaagccagagtggttgctggagatagccccccactgttacgatcccaaggatgttggagac |
75 |
Q |
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| T |
7290693 |
cacagagttaaaggcagagtggttgttggagatagcccctcactattaccagctcaaggatgttgaagac |
7290762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 15843016 - 15843058
Alignment:
| Q |
72 |
agactcgagttccaagaaattgcctcgtggatgtggacttgca |
114 |
Q |
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| T |
15843016 |
agactcgagttcgaagaaaatacctcgtggatgtggacttgca |
15843058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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