View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_148 (Length: 243)
Name: NF3820_high_148
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_148 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 52849914 - 52850148
Alignment:
| Q |
10 |
attattctggtgctcttgtatataacttatatttaattagaaaataggacttgttgtctaataagaactcacccttggatcttttgtgattataacttaa |
109 |
Q |
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| T |
52849914 |
attactctggtgctcttgtatataacttatatttaaatagaaaataggaattgttgtctaataagaactcacccttggatcttttgtgattataacttaa |
52850013 |
T |
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| Q |
110 |
actaaatgtcacgagattaaaagttctatgctcttgcctaagttcatgagttccttcatgaagccttcaccaatgtg-nnnnnnnattgtatgataggta |
208 |
Q |
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| T |
52850014 |
actaaatgtcacgagattaaaagttctatgctcttacctaagttcatgagttccttcatgaagccttcaccaatgtgtttgttttattgtatgataggta |
52850113 |
T |
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| Q |
209 |
cctatgagaacacctccaatcaacaaaaatgtgaa |
243 |
Q |
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| T |
52850114 |
cctatgagaacacctccaatcaacaaaaatgtgaa |
52850148 |
T |
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