View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_157 (Length: 236)
Name: NF3820_high_157
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_157 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 42974254 - 42974474
Alignment:
| Q |
16 |
gaaagcatataggcttacataacgatcatgcaagccgcttctgagtgatgcggtattgttacaaggcggtgtattaatgctatatccatcgatgtttcct |
115 |
Q |
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| T |
42974254 |
gaaagcatataggcttacataacgatcatgcaagccgcttctgagtgatgcggtattgttacaaggcggtgtattaatgctatatccatcgatgtttcct |
42974353 |
T |
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| Q |
116 |
tgctcggtaattgcaacagtaagagcctgcaaacattgcactgatggatgctgaatggacccaaaatcacagccaatgtttagcttcttatatgtggaat |
215 |
Q |
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| T |
42974354 |
tgctcggtaattgcaacagtaagagcctgcaaacattgcactgatggatgctgaatggacccaaaatcacagccaatgtttagtttcttatatgtggaat |
42974453 |
T |
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| Q |
216 |
ctgaaatcaaaccatgtgtcc |
236 |
Q |
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| T |
42974454 |
ctgaaatcaaaccatgcgtcc |
42974474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 236
Target Start/End: Original strand, 42980692 - 42980900
Alignment:
| Q |
28 |
gcttacataacgatcatgcaagccgcttctgagtgatgcggtattgttacaaggcggtgtattaatgctatatccatcgatgtttccttgctcggtaatt |
127 |
Q |
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||||||||||||| | | |||||| |||||||||||||||||||||||||||||||| |||| |||||||||| ||| ||||||||||| || | || | |
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| T |
42980692 |
gcttacataacgaccgttcaagccacttctgagtgatgcggtattgttacaaggcggagtataaatgctatatggatcaatgtttccttgttcagcaact |
42980791 |
T |
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| Q |
128 |
gcaacagtaagagcctgcaaacattgcactgatggatgctgaatggacccaaaatcacagccaatgtttagcttcttatatgtggaatctgaaatcaaac |
227 |
Q |
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| T |
42980792 |
gctactctaagagcctgaaaacattgcactgatggatgcagagatgatccaaaatcacatgcaattcttagaatcctatatgtagaatctgaaattaaac |
42980891 |
T |
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| Q |
228 |
catgtgtcc |
236 |
Q |
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| T |
42980892 |
catgtgtcc |
42980900 |
T |
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