View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_high_16 (Length: 490)
Name: NF3820_high_16
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 107 - 232
Target Start/End: Complemental strand, 19788870 - 19788745
Alignment:
| Q |
107 |
tggaattctttgtcagtctcaattaccactgttaaaaggttcatgactgccatttctgctttcctgacatgatattcataaatttaaggagagctggcaa |
206 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19788870 |
tggaattctttgtcagtctcaattgctactgttaaaaggctcatgactgccatttctgctttcctgacatgatattcataaatttaaggagagctggcaa |
19788771 |
T |
|
| Q |
207 |
aaacaggatccctgtggccacagtca |
232 |
Q |
| |
|
|||||||| ||||| |||||||||| |
|
|
| T |
19788770 |
aaacaggacccctgctgccacagtca |
19788745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 19789013 - 19788906
Alignment:
| Q |
1 |
tgggaacttaaacgcttctgtgctgttcatggacattttcaagatagactgatcacagaggacatggccacgggacatcaacattggatggttatcctca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
19789013 |
tgggaacttaaacgcttctgtgctgttcatggacattttcaagatagactgatcacagaggacatggccacaggacaacaacattggatggttatcctca |
19788914 |
T |
|
| Q |
101 |
gttgcttg |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
19788913 |
gttgcttg |
19788906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 240 - 471
Target Start/End: Complemental strand, 19788465 - 19788241
Alignment:
| Q |
240 |
agcaagtgtcagaattagtggcagcccaatcaagggctgggtcctccaggttctgattctgcatggcttgaagtattttatacatttctacgaatggata |
339 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| ||| ||||| | | ||||||| ||||||||| |
|
|
| T |
19788465 |
agcaagtgtcagaattagcggcagcctaattgagggctgggtcctccaggttctgattc--cat---ttgaa--agt------atttctatgaatggata |
19788379 |
T |
|
| Q |
340 |
tttcata-ttgcggcagactcaggctctccaactgcacttaaaaaa-tggtcccttgcatcaaaatagtcccggtgataaaaatggttggcaataatttg |
437 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| ||||||||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
19788378 |
tttcataattgcggcagactcgggctctccaactgcccttaaaaaaatggtcccttacatcaaaatggtcctggtgaaaaaaatggttggcaataatttg |
19788279 |
T |
|
| Q |
438 |
----aaagtgtgtatatcaatgtcgatgtttctctaag |
471 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
19788278 |
atttaaagtgtgtataaaaatgtcgatgtttctctaag |
19788241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 246 - 471
Target Start/End: Complemental strand, 28172830 - 28172603
Alignment:
| Q |
246 |
tgtcagaattagtggcagcccaatcaagggctgggtcctccaggttctgattctgcatggcttgaagtattttatacatttctacgaatggatatttcat |
345 |
Q |
| |
|
||||||||||||| |||||||| | |||||||| |||||||||||||||||||||||||| ||||||| |||||| || | ||||||| ||||||| |
|
|
| T |
28172830 |
tgtcagaattagtcgcagcccagttgagggctgg---ctccaggttctgattctgcatggcttcgagtatttgatacatctccaagaatggagatttcat |
28172734 |
T |
|
| Q |
346 |
a-ttgcggcagactcaggctctccaactgcacttaaaaaatggtcccttgcatcaaaatagtcccggtgataaaaatggttggcaataatttg----aaa |
440 |
Q |
| |
|
| |||| ||||| |||||||| || |||||||| | ||||||||||| | |||| ||| | || || ||||||||||||||||||| ||||| ||| |
|
|
| T |
28172733 |
acttgcagcagattcaggctcaccgactgcactaagaaaatggtcccctacatcgaaaaggccctggcgataaaaatggttggcaattatttgatttaaa |
28172634 |
T |
|
| Q |
441 |
gtgtgtatatcaatgtcgatgtttctctaag |
471 |
Q |
| |
|
||||||||||||| || | ||||||| |||| |
|
|
| T |
28172633 |
gtgtgtatatcaaagttggtgtttctgtaag |
28172603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 28173394 - 28173292
Alignment:
| Q |
6 |
acttaaacgcttctgtgctgttcatggacattttcaagatagactgatcacagaggacatggccacgggacatcaacattggatggttatcctcagttgc |
105 |
Q |
| |
|
||||||| ||| |||||| ||| |||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| |||| ||||||||||| |
|
|
| T |
28173394 |
acttaaatacttttgtgctattcttggacattttcaagatagactgcttacagaggacatggccacaggacatcaacattggagggttctcctcagttgc |
28173295 |
T |
|
| Q |
106 |
ttg |
108 |
Q |
| |
|
||| |
|
|
| T |
28173294 |
ttg |
28173292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University