View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_160 (Length: 233)
Name: NF3820_high_160
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_160 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 49 - 218
Target Start/End: Original strand, 40692843 - 40693012
Alignment:
| Q |
49 |
agctactgccatacttgcagttgaaaaatgctttctgttgaagcactctttgcttttagattatacatacctatagtatttattttatagtacacagaag |
148 |
Q |
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| T |
40692843 |
agctactgccatacttgcagttgaaaaatgctttctgttgaagcactctttgcttttagattatacatacctatagtttttattttatagtacacagaag |
40692942 |
T |
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| Q |
149 |
tttaggttatacgcagagtatacgcaaatacaccatacttgaatataccttgcctctaccccaccctttg |
218 |
Q |
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| T |
40692943 |
tttaggttatacgcagagtatacgcaaatacaccatacttgaatataccttgcctctaccccaccctttg |
40693012 |
T |
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