View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_172 (Length: 208)
Name: NF3820_high_172
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_172 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 11785024 - 11785202
Alignment:
| Q |
16 |
cacagaactatcggtggaacttcataatttaacgaaacagatcaaaggatttaaatattcatattttgatttatatcatctatcttttgaagtcataagc |
115 |
Q |
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| T |
11785024 |
cacaaaactatcagtggaacttcataatttaacgaaacagatcaaaggatttaaatattcatattttgatttatatcatctatcttttgaagtcataagc |
11785123 |
T |
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| Q |
116 |
aacccttccaaatttggtaagttatggtatatttatttttagcactgtttatatatctaaatttgagtattgatgatca |
194 |
Q |
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| T |
11785124 |
aacccttccaaatttggtaagttatggtatatttatttttagcactgtttatatatctaaatttgagtattgatgatca |
11785202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 11779745 - 11779888
Alignment:
| Q |
16 |
cacagaactatcggtggaacttcataatttaacgaaacagatcaaaggatttaaatattcatattttgatttatatcatctatcttttgaagtcataagc |
115 |
Q |
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| T |
11779745 |
cacaaaactatcagtggaacttaagaatttaacaaaaaagatcaaaggatttaaatattcatattttgatttctatcatctatcttttgaagtcataagg |
11779844 |
T |
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| Q |
116 |
aacccttccaaatttggtaagttatggtatatttatttttagca |
159 |
Q |
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| T |
11779845 |
aacccttccaaatttggtaggttatgtcatatttatttttagca |
11779888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 11765204 - 11765319
Alignment:
| Q |
44 |
ttaacgaaacagatcaaaggatttaaatattcatattttgatttatatcatctatcttttgaagtcataagcaacccttccaaatttggtaagttatggt |
143 |
Q |
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| T |
11765204 |
ttaaagaaacagatcaaaggatttaaatattcatatttcaatttctttgacttttcttatgaattcataaacaacccatccaaatatggtaggtaatggt |
11765303 |
T |
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| Q |
144 |
atatttatttttagca |
159 |
Q |
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|||||||||| ||||| |
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| T |
11765304 |
atatttatttatagca |
11765319 |
T |
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