View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_176 (Length: 205)
Name: NF3820_high_176
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_176 |
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Alignment Details
Target: chr6 (Bit Score: 82; Significance: 6e-39; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 16839487 - 16839591
Alignment:
| Q |
15 |
atgaaacaaggtttgctataggaaattgaatatgataaattgtttgtttttgatgattaaatcggtggctatagtttgcct-ttatagacaacaataatt |
113 |
Q |
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| T |
16839487 |
atgaatcaaagtttgctataggaaattgaatatgataaattgtttgtttttgatgattaaatcggtggctatag-ttgcctcttatagacaacaataatt |
16839585 |
T |
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| Q |
114 |
agtatt |
119 |
Q |
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|||||| |
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| T |
16839586 |
agtatt |
16839591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 16798184 - 16798278
Alignment:
| Q |
25 |
gtttgctataggaaattgaatatgataaattgtttgtttttgatgattaaatcggtggctatagtttgcct-ttatagacaacaataattagtatt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| |
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| T |
16798184 |
gtttgctataggaaattgaatatgataaattgtttgtttttgatgattaaatcggtggttatag-ttgcctcttatagacaacaataattagtatt |
16798278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 17070511 - 17070615
Alignment:
| Q |
15 |
atgaaacaaggtttgctataggaaattgaatatgataaattgtttgtttttgatgattaaatcggtggctatagtttgcct-ttatagacaacaataatt |
113 |
Q |
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||||| ||| ||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| ||||| || |||| | |||||||||||||||||| |
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| T |
17070511 |
atgaatcaaagtttgctgtaggaagttgaatatggtaaattgtttgtttttgatgattaaatcgggggctaaag-ttgcttcttatagacaacaataatt |
17070609 |
T |
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| Q |
114 |
agtatt |
119 |
Q |
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|||||| |
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| T |
17070610 |
agtatt |
17070615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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