View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_high_18 (Length: 468)
Name: NF3820_high_18
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 216 - 452
Target Start/End: Complemental strand, 36559837 - 36559601
Alignment:
| Q |
216 |
tgtatgccattataaatgcatgtatacaagtgtgtgtacaaatatttaataccatttatatttgataagacttctaaaataaaatattaaatgagtcttg |
315 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36559837 |
tgtataccattataaatgcatgtatacaagtgtgtgtacaaatatttaataccatttatatttgataagacttctaaaataaaatattaaatgagtcttg |
36559738 |
T |
|
| Q |
316 |
ataannnnnnnnnnnnncttcttataaatatgactcactatttataaattgaattagagaatatgatgatggaggcaagaaatatgatcaaaatatattg |
415 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36559737 |
ataatttttatttttttcttcttataaatatgactcactatttgtaaattgaattagagaataggatgatggtggcaagaaatatgatcaaaatatattg |
36559638 |
T |
|
| Q |
416 |
aataaaccatcaatttaattatatactatcattttct |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36559637 |
aataaaccatcaatttaattatatactatcattttct |
36559601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 36560041 - 36559909
Alignment:
| Q |
13 |
catcaatcctaatcctaataaattgaaatctacttatttgtaagggagacgagaaactagttccagaagccatgcaagcaaacacatccacgtagacaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36560041 |
catcaatcctaatcctaataaattgaaatctacttatttgtaagggagacgagaaactagttccagaagccatgcaagcaaacacatccacgtagacaat |
36559942 |
T |
|
| Q |
113 |
gtaacagcctaataaatttatgattttttgacc |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
36559941 |
gtaacagcctaataaatttatgattttttgacc |
36559909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University