View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_19 (Length: 467)
Name: NF3820_high_19
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 2 - 454
Target Start/End: Complemental strand, 44845463 - 44845011
Alignment:
| Q |
2 |
gaggagtagcataggctgccatttgagtctgatccgaatactgaaccccacaaaacttgtctgaatcgttacatgttgtactgttgtcgcgacagacaca |
101 |
Q |
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| T |
44845463 |
gaggaatagcacaggctgccatttgagtctgatccgaatactgaaccccacaaagcttgtctgaatcgttacatgttgtactgttgtcgcgacagacaca |
44845364 |
T |
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| Q |
102 |
accgcatttggattcgggttgagtcagttgatgattgaccaaactttgaagggaaataagcaagacagaaagaatcaatgggaacagaatcaacaagatg |
201 |
Q |
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| T |
44845363 |
accgcatttggattcgggttgagtcagttgatgattgaccaaactttgaagggaaataagcaagacagaaagaatcaatgggaacagaatcaacaagatg |
44845264 |
T |
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| Q |
202 |
ttggtcttcacgttccgtttctgtataaccnnnnnnncgtgacatgcaagtaagttagataataatagtccgtaagacctaactcaaatgacaatgacta |
301 |
Q |
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| T |
44845263 |
ttggtcttcacgttccgtttctgtataaccaaaaaaacgtgacatgcaagtaagttagataataatagtccgtaagacctaactcaaatgacaatgacta |
44845164 |
T |
|
| Q |
302 |
tattgttagatcggacatttttaacccgattcaaactcaagacctaacaattgtgcgtgtgagtttgagtggtgcttgatactacttaagaaaatataat |
401 |
Q |
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| T |
44845163 |
tattgttagatcggacatttttaacccgattcaaaatcaagacctaacaattgtgcgtgtgagtttgagtggtgcttgatactacttaagaaaatataat |
44845064 |
T |
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| Q |
402 |
aatgaataatggatagtgatatagttgtacctggaaggttaagttctttctga |
454 |
Q |
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| T |
44845063 |
aatgaataatggatagtgatatagttgtacctggaaggttaagttctttctga |
44845011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 44858410 - 44858354
Alignment:
| Q |
24 |
ttgagtctgatccgaatactgaaccccacaaaacttgtctgaatcgttacatgttgt |
80 |
Q |
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| T |
44858410 |
ttgattctgattagaatactggaccccacaaaccttctccgaatcgttacatgttgt |
44858354 |
T |
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