View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_25 (Length: 449)
Name: NF3820_high_25
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 1191872 - 1192191
Alignment:
| Q |
12 |
agcacagacacacaaacatttacacgttgacaccgatct-----tgagaaaattacgtaaacaaatataatcacttatgtcggtgtcacatcgtgtcggt |
106 |
Q |
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| T |
1191872 |
agcacagacacacaaacatttacacgttgacaccgatctaatcttgagaaaattacataaacaaatataatcacttatgtcggtgtcacatcgtgtcggt |
1191971 |
T |
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| Q |
107 |
gtcgaacattgacatgtgttgtacaccagaacacaccatggatcataagtgccggttctatatcaagctattacacttctctctatttctttcggtataa |
206 |
Q |
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| T |
1191972 |
gtcggacattaacatgtgttgtacaccagaacacaccgtggatcataagtgccggttctatatcaagctattacacttctctctatttctttcagtataa |
1192071 |
T |
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| Q |
207 |
aatttcagctcgatctcattgttgtgtacctatgatatcaatcagcaagcaacaagcctttcatctcactcaaataccattgttcactttttaaaatcct |
306 |
Q |
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| T |
1192072 |
aatttcagctcgatctcattgttgtgtacctatgatatcaattagcaagcaacaagcctttcatctcactcaaataccattgttcactttttaaaatcct |
1192171 |
T |
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| Q |
307 |
tttgactaataagtagtaac |
326 |
Q |
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| T |
1192172 |
tttgactaataagtagtaac |
1192191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 274 - 431
Target Start/End: Original strand, 1179181 - 1179337
Alignment:
| Q |
274 |
actcaaataccattgttcactttttaaaatccttttgactaataagtagtaactgtaccttttgtgatgtttcatggtaatctaaaattaggtacataat |
373 |
Q |
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| T |
1179181 |
actcaaataccattgttcactttttaaaatccctttgactaatttgtaataactgtaacttttgtgacgtttcat-gtaatctaaaattaggcaagtgtt |
1179279 |
T |
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| Q |
374 |
gtttatatgtatgttgggatgaatagtatttaatttggcagcatttggatcacattcc |
431 |
Q |
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| T |
1179280 |
gtttatatgtatgctgggatgcacagaatttattttggcagcatttggatcacattcc |
1179337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 1178530 - 1178710
Alignment:
| Q |
12 |
agcacagacacacaaacatttacacgttgacaccgat-----cttgagaaaattacgtaaacaaatataatcacttatgtcggtgtcacatcgtgtcggt |
106 |
Q |
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| T |
1178530 |
agcacaaacatacaaacacttacacgttgacactgatacaatcttgagaaaattacataaacaaatataagtacatgtgtcaatgccgtatagtgtcagg |
1178629 |
T |
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| Q |
107 |
gtcgaacattgacatgtgttgtacaccagaacacaccatggatcataagtgccggttctatatcaagctattacacttctct |
188 |
Q |
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| T |
1178630 |
accagacattgacatgtgtcgtacaccggaacacaccat-gatcataaggggcggttttataacaagctattacgcttctct |
1178710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 429
Target Start/End: Complemental strand, 4160242 - 4160185
Alignment:
| Q |
372 |
atgtttatatgtatgttgggatgaatagtatttaatttggcagcatttggatcacatt |
429 |
Q |
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| T |
4160242 |
atgtgtataggtatgttgggatgcatagtatttaatttggtagcatttggatcacatt |
4160185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 383 - 429
Target Start/End: Original strand, 3004084 - 3004130
Alignment:
| Q |
383 |
tatgttgggatgaatagtatttaatttggcagcatttggatcacatt |
429 |
Q |
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| T |
3004084 |
tatgttgggatgcatagtatttaatttggtagcatttggatcacatt |
3004130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 429
Target Start/End: Original strand, 24760872 - 24760929
Alignment:
| Q |
372 |
atgtttatatgtatgttgggatgaatagtatttaatttggcagcatttggatcacatt |
429 |
Q |
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|||| |||| ||||||||||||| ||| |||||||||||| ||||||||||||||||| |
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| T |
24760872 |
atgtgtataggtatgttgggatgcatattatttaatttggtagcatttggatcacatt |
24760929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 429
Target Start/End: Original strand, 52128307 - 52128364
Alignment:
| Q |
372 |
atgtttatatgtatgttgggatgaatagtatttaatttggcagcatttggatcacatt |
429 |
Q |
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|||| |||| ||||||||||||| ||| |||||||||||| ||||||||||||||||| |
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| T |
52128307 |
atgtgtataggtatgttgggatgcatattatttaatttggtagcatttggatcacatt |
52128364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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