View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_29 (Length: 440)
Name: NF3820_high_29
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 193 - 413
Target Start/End: Complemental strand, 36962176 - 36961956
Alignment:
| Q |
193 |
cccaacaaataacatttccaatcgagaaataacatctcttttgaccaatgaaaatagagaaaaaagttatttcaaatggttgttcaaatatatcactact |
292 |
Q |
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| T |
36962176 |
cccaacaaataacatttccaatcgagaaataacatctcttttgaccaatgaaaatagagaaaaaagttatttcaaatggttgttcaaatatatcactact |
36962077 |
T |
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| Q |
293 |
cttttcaaaagatatgcttttatttgtcatccaaatgaatgacctcaatccataaactagaaattcataacaccttctacaaacatgttcttttgttaaa |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36962076 |
cttttcaaaagatatgcttttatttgtcatccaaatgaatgacctcaatccataaactagaaattcaaaacaccttctacaaacatgttcttttgttaaa |
36961977 |
T |
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| Q |
393 |
catgaaaagaacatgttccaa |
413 |
Q |
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| T |
36961976 |
catgaaaagaacatgttccaa |
36961956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 36962312 - 36962228
Alignment:
| Q |
74 |
agggaaaattaactccatcaagatcagaccctggataattgtgaaatatcaattgcatgccccatctaaggcatgattgagctat |
158 |
Q |
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| T |
36962312 |
agggaaaattaactccatcaagatcagaccctggataattctgaaatatcaattgcatgccccatccaaggcatgattgagctat |
36962228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 4209517 - 4209461
Alignment:
| Q |
231 |
ttttgaccaatgaaaatagagaaaaaag---ttatttcaaatggttgttcaaatata |
284 |
Q |
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| T |
4209517 |
ttttgaccaatgaaaagagaaaaaaaagaaattatctcaaatggttgttcaaatata |
4209461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 32171087 - 32171032
Alignment:
| Q |
231 |
ttttgaccaatgaaaatagagaaaaaag---ttatttcaaatggttgttcaaatat |
283 |
Q |
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|||||||||||||||| ||||||||||| || | |||||||||||||||||||| |
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| T |
32171087 |
ttttgaccaatgaaaagagagaaaaaagaaattgtctcaaatggttgttcaaatat |
32171032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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