View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_3 (Length: 791)
Name: NF3820_high_3
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 11 - 706
Target Start/End: Original strand, 18965726 - 18966419
Alignment:
| Q |
11 |
cagagatgatagttttccatgtcttgctcacactcttaagttgcatcagagatttcacactaagatgtgatagtatttcgataataagttcttcggaatg |
110 |
Q |
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| T |
18965726 |
cagagatgatggttttccatgtcttgctcacacacttaagttgcatcagagatttcacactaagatgtgatagtatttcgataataagttcttcggagtg |
18965825 |
T |
|
| Q |
111 |
tattaccgccaataccgagggatttggctgaggtagcgcttccaacgcattggacggaggcggtgattccaacacattggacggaggcggggttttacgg |
210 |
Q |
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| T |
18965826 |
gattaccgccaataccgagggatttggctgagacagaaatgcggatacattggacggaggcggtgattccaacacattggatggaggcggggttttacgg |
18965925 |
T |
|
| Q |
211 |
aggatcaccacatagggaagctgccgaggcggaggaaaggtgttcatgataacttgtgcaattagttttctttctttcttttgaggaaatgtataagaaa |
310 |
Q |
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| T |
18965926 |
aggatcaccacatagggaagctgccgaggcggaggaaatgtgttcat---aacttgtgcaattagttttctgtatttcttttgaggaaatgtataagcaa |
18966022 |
T |
|
| Q |
311 |
ttctcttccacatgtcattaattcctacatttaaaaaatcaacacattcgggtcttacgccttcattttcgttcataacctctttcttttacagtttatc |
410 |
Q |
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| T |
18966023 |
ttctcttccacatgtcattaattcctacatt-aaaaaatcaatacattcgggtattacgccttcattttcgttcataacctctttcttttacagtttatc |
18966121 |
T |
|
| Q |
411 |
aaagccactcaataatattcctaatagatgtaaaagttggaagcaagatag---catattagcaaatatgcttctagcctctaccgttaatacaattgaa |
507 |
Q |
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| T |
18966122 |
aaagccacttaataatattcctaatacatgtaaaagttggaagcaagatggatatatattagcaaatatgcttctagcctctaccgttaatacaattgaa |
18966221 |
T |
|
| Q |
508 |
ctcaacgagaaatgattttttggtgttgttataaatccttgatactttgttgggctcatttttattcttcatctattggttcttacggatcaacgaaaag |
607 |
Q |
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||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18966222 |
ctcaacgagaagtgatttttt-attttgttataaatccttgatactttgttgggctcatttttattcttcatctattggttcttacggatcaacgaaaag |
18966320 |
T |
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| Q |
608 |
tcgtttatatgcattataaaaactaagaatctaccattaccaaagtttggacgttgcataaagatattgtaatgacagtagaggctggaagcatatttg |
706 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18966321 |
tagtttatatgcattataaaaactaagaatctaccattaccaaagtttggacgtggcataaagatattgtaatgacactagaggctggaagcatatttg |
18966419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 708 - 772
Target Start/End: Original strand, 18966461 - 18966525
Alignment:
| Q |
708 |
gaaaatacgttttttccatcggcggtagttaactaccgttcagtctttctggttgcagttaatta |
772 |
Q |
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| T |
18966461 |
gaaaatacgttttttctttcaacgatagttaactactgttcagtctttctggttgcagttaatta |
18966525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 14075629 - 14075591
Alignment:
| Q |
302 |
tataagaaattctcttccacatgtcattaattcctacat |
340 |
Q |
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| T |
14075629 |
tataagcaattcacttccacatgtcattaattcctacat |
14075591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 14385657 - 14385619
Alignment:
| Q |
302 |
tataagaaattctcttccacatgtcattaattcctacat |
340 |
Q |
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| T |
14385657 |
tataagcaattcacttccacatgtcattaattcctacat |
14385619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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