View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_33 (Length: 424)
Name: NF3820_high_33
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 5304590 - 5304385
Alignment:
| Q |
1 |
gcaaagcttgcgtaacaatgcctatacactttgagatccagaactgaactgagctcccaatgtccatgcagattccaaatctgaaactccaaatcgaaga |
100 |
Q |
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| T |
5304590 |
gcaaagcttgcgtaacaatgcctatacactttgagatctagaactgaactgagctcccaatgtccatgcagattccaaatctgaaactccaaatcgaaga |
5304491 |
T |
|
| Q |
101 |
tatgttagattgagctctctataacttggggatagatgtcatactcaccttcaaagagagggaggattgaataacaatgatcaatcagacaaggagagaa |
200 |
Q |
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| T |
5304490 |
tatgttagattgagctctctataacttggggatagatgtcatactcaccttcaaagagagggaggattgaataacaatgatcaatcagacaaggagagaa |
5304391 |
T |
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| Q |
201 |
tgagag |
206 |
Q |
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|||||| |
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| T |
5304390 |
tgagag |
5304385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 6454204 - 6454138
Alignment:
| Q |
62 |
gtccatgcagattccaaatctgaaactccaaatcgaagatatgttagattg-agctctctataactt |
127 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||| ||||||||| |
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| T |
6454204 |
gtccatgcagattctaaatctgaaactccaaatcgaagaaatgttttattgaagctcgctataactt |
6454138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 6762137 - 6762203
Alignment:
| Q |
62 |
gtccatgcagattccaaatctgaaactccaaatcgaagatatgttagattg-agctctctataactt |
127 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||| ||||||||| |
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| T |
6762137 |
gtccatgcagattctaaatctgaaactccaaatcgaagaaatgttttattgaagctcgctataactt |
6762203 |
T |
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