View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_high_34 (Length: 423)
Name: NF3820_high_34
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 4132690 - 4133095
Alignment:
| Q |
1 |
acgaactacaatcacaaaatgaaaagctagctacttccaattctcacgaatcacattcattgaagtttgagaactattggctcaaagtcacaccctccat |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4132690 |
acgaactacaatcgcaaaatgaaaagctagctacttccaattctcacgaatcacattcattgaagtttgagaactattggctcaaagtcacaccctccat |
4132789 |
T |
|
| Q |
101 |
aaagagaaataatccaatagtcagagcacaaatattcccaatcgtttctgcactctgctgagaaagacatcaacgtgctgcgccagaatacaagaccgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
4132790 |
aaagagaaataatccaatagtcagagcacaaatattcccaatcgtttctgcactctgctgagaaagacatcaacatgctgcgccaaaatacaagaccgca |
4132889 |
T |
|
| Q |
201 |
aaatagcatagttatacacaccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcatttccaatttcttgtatatccctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4132890 |
aaatagcatagttatacacaccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcatttccaatttcttgtatatccctt |
4132989 |
T |
|
| Q |
301 |
gttgctaattccacaaatctggaagcaacatatgttgcaacggtttagatagccacaccatcagacccttccgattcaaattttactgctactaaccaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4132990 |
gttgctaattccacaaatctggaagcaacatatgttgcaatggtttagatagccacaccatcagacccttccgattcaaattttactgctactaaccaat |
4133089 |
T |
|
| Q |
401 |
tagttc |
406 |
Q |
| |
|
|||||| |
|
|
| T |
4133090 |
tagttc |
4133095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 43142220 - 43142144
Alignment:
| Q |
221 |
ccaaaactttatagcgacctttgaattacactccacacagataacaccaagatgcatttccaatttcttgtatatcc |
297 |
Q |
| |
|
||||||||||| | ||| |||| | | |||| |||||||||| ||||||||| | |||||||||||||||||||| |
|
|
| T |
43142220 |
ccaaaactttacaccgagctttctaattcactacacacagatagtaccaagatgtaattccaatttcttgtatatcc |
43142144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University