View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_35 (Length: 422)
Name: NF3820_high_35
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 409
Target Start/End: Complemental strand, 30001919 - 30001510
Alignment:
| Q |
12 |
agagagggttcaagtacttctccaaagaacactgcatcctttttcttctagacacattaaatagtggnnnnnnnatagtgtctcaaacccacatatttaa |
111 |
Q |
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| T |
30001919 |
agagagggttcgagtacctctccaaagaacactgcatcctttttattctagacacattaaatagtggttttattatggtgtctcaaacccacatatttaa |
30001820 |
T |
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| Q |
112 |
gtgacatcatgaatatacaatagtcaatttgggggttaaaaggatggtagaccttgccggagattttctctcaacattacctcatgttccacatttacaa |
211 |
Q |
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| T |
30001819 |
atgacatcatgaatatgcaatagtcaatttgggggttaaaaggatggtagaccttgccggagattttctttcaacattacctcatgatccacatttacaa |
30001720 |
T |
|
| Q |
212 |
gccaccttgtttttgtctttgcttctttaatagaaaaagttcattttaattaactaactaaccagtaacaatccagttttctaaaaagctttcgtgtaaa |
311 |
Q |
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| T |
30001719 |
gccaccttgtttttgt-tttgcatctttaata-aaaaaaataaaattaattaactaactaaccagtaacaatccagttttctaaaaagctttcgtgtaaa |
30001622 |
T |
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| Q |
312 |
tggaaaacttccc---------aacaaagatccactttgttacttgtggaatttgatttcctttagattaggt-----atttaactgtttaatatatgtt |
397 |
Q |
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| T |
30001621 |
tggaaaacttcccaacaacaataacaaagatccactttgttacttgtggaatttgatttcctttagattaggtatttaatttaactgtttaatatatgtt |
30001522 |
T |
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| Q |
398 |
tatgcatatact |
409 |
Q |
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| T |
30001521 |
tatgcatatact |
30001510 |
T |
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Back To:
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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 281 - 409
Target Start/End: Original strand, 22875380 - 22875522
Alignment:
| Q |
281 |
aatccagttttctaaaaagctttcgtg------taaatggaaaacttcccaacaa--------agatccactttgttacttgtggaatttgatttccttt |
366 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |
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| T |
22875380 |
aatccagttttctaaagagctttcgtgaccgtgtaaatggaaaacttcccaacaacaataacaagatccactctgttactagtggaatttgatttccttt |
22875479 |
T |
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| Q |
367 |
agattaggtatttaactgtttaatatatgtttatgcatatact |
409 |
Q |
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| T |
22875480 |
agattaggtatttaactgtttaatatttgtttatgcatatact |
22875522 |
T |
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