View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_high_38 (Length: 416)
Name: NF3820_high_38
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 7340081 - 7340479
Alignment:
| Q |
1 |
ctttctaagattctcaagtgtttcttccattctcttcgcgatggttttaaaattggatgtatgatgtatcttaattcacggtgtatcttaacttaaccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7340081 |
ctttctaagattctcaagtgtttcttccattctcttcgcgatggttttaaaattggatgtatgatgtatcttaattcacggtgtatctta-----accag |
7340175 |
T |
|
| Q |
101 |
cataaatagaattttcaccaaatttcagcaaataatgcctgtattttaataccagtgcaatctcaagaggtgtgattactactcccattagtaaatatat |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7340176 |
cataaacagaattttcaccaaatttcagcaaataatgcctgtattttaataccagtgcaatctcaagaggtgtgattactactcccattagtaaatatat |
7340275 |
T |
|
| Q |
201 |
tttccacaacttatatatggacatacagacttcacgatctcctatccatactatttccagcaaagacactgtaattaccaagtttctaagattcctttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7340276 |
tttccacaacttatatatggacatacagacttcacgatctcctatccatactatttccagcaaagacactgtaattaccaagtttctaagattcctttgt |
7340375 |
T |
|
| Q |
301 |
gaaaattcaannnnnnnnnnctccttgtcacccctttagttttaaaaatgaaaatctgtttgtaattgtgaacctgttgtagtctaagtcttcaattcac |
400 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7340376 |
gaaaattcaa-tttttttttctccttgtcacccctttagttttaaaaatgaaaatctgtttgtaattgtgaacctgttgtagtctcagtcttcaattcac |
7340474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 1547948 - 1548053
Alignment:
| Q |
131 |
aataatgcctgtattttaataccagtgcaatctcaagaggtgtgattactactcccattagtaaatatattttccacaacttatatatggacatacagac |
230 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | |||| ||| ||||| |||||||| || |||| ||||||||||||||||||||| | || |
|
|
| T |
1547948 |
aataatgcttgtattttaataccagtgcaattt--------gtgaccacttctccctttagtaaacatgtttttcacaacttatatatggacatataaac |
1548039 |
T |
|
| Q |
231 |
ttcacgatctccta |
244 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
1548040 |
ttcatgatctccta |
1548053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 1548094 - 1548178
Alignment:
| Q |
321 |
ctccttgtcacccctttagttttaaaaatgaaaatctgtttgtaattgtgaacctgttgtagtctaagtcttcaattcacttcat |
405 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||||||| ||||||||| ||||||||||| ||| || | ||| ||||||||||||| |
|
|
| T |
1548094 |
ctccttctcaacccttaagttttaaaaatgaaaagatgtttgtaaatgtgaacctgtcgtaaccttaatctacaattcacttcat |
1548178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University