View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_4 (Length: 750)
Name: NF3820_high_4
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 6 - 535
Target Start/End: Complemental strand, 8937803 - 8937290
Alignment:
| Q |
6 |
aatataaaggttcgcattgtaacgggacaagaattatttttgtaccaatgatgtctgaagggactaaaccattgctgaatcttccagttggttgatttcc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8937803 |
aatataaaggttcgcattgtaacgggacaagaattatttttgtaccaatgatgtctgaagggactaaaccattgctgaatcttccagttggttgatttcc |
8937704 |
T |
|
| Q |
106 |
accaccaaagtctttaccataaggtggaaagttgcacttgaacacagcgttgatgatgtagttgttattgactgagtcaactattgagtcaccaaaggca |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
8937703 |
accaccaaagtctttaccataaggtggaaagttgcacttgaacacagtgttgatgatgtagttgttattacctgagtcaactatagagtcaccaaaggca |
8937604 |
T |
|
| Q |
206 |
atgaatgctggaactgtttcattgtttggtagattcacagcattaccataatgtagagagacaaggattatagcaagagagaaaagagtgacaagaggtg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8937603 |
atgaatgctggaactgtttcattgtttggtagattcacagcattaccataatgtagagagacaaggattatagcaagagagaaaagagtgacaagaggtg |
8937504 |
T |
|
| Q |
306 |
attgaaaaagaaggttttgaaagagcaacttcatgtttttgtagaataatatgatgagcttgactacaccttattggaacttcactttagcttagtgata |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8937503 |
attgaaaaagaaggttttgaaagagcaacttcatgtttttgtagaataatatgatgagcttgactacacc----------------ttagcttagtgata |
8937420 |
T |
|
| Q |
406 |
taaaccttttataaaccttaacataaattctgtgataccgaccccagataaaatgtttaatttactggattttaatcctttaagatattgaatatgcatc |
505 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8937419 |
taaaccttttataaaccttaacataaattatgtgataccaaccccagataaaatgtttaatttactggattttaatcctttaagatattgaatatgcatc |
8937320 |
T |
|
| Q |
506 |
taaaaatatattgaatacacaatttttaaa |
535 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
8937319 |
taaaaatatattgaatacacaatttttaaa |
8937290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 535 - 735
Target Start/End: Complemental strand, 8937250 - 8937050
Alignment:
| Q |
535 |
acatcccttcaaaaaattatttcttacatattcttaagaaaagtataccattatgtttgtttaaaattattggggaaaaagttgtatttctatctcttct |
634 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8937250 |
acatcccttcaaaaaaatatttcttacatattcttaagaaaagtataccattacgtttgtttaaaattattggggaaaaagttgtatttctatctcttct |
8937151 |
T |
|
| Q |
635 |
attaaaaatgattttcttcgaaagttaatgaaaatagcttttcatttttcagcataaatataactaatataacttttgataaaccttaaataaaggaaac |
734 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8937150 |
attaaaaatgattttcttcgaaagttaatgaaaatagcttttcatttttcagcataaatataactaatataacttttgataaaccttaaataaaggaaac |
8937051 |
T |
|
| Q |
735 |
t |
735 |
Q |
| |
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| |
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|
| T |
8937050 |
t |
8937050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 40 - 424
Target Start/End: Complemental strand, 8945954 - 8945571
Alignment:
| Q |
40 |
tatttttgtaccaatgatgtctgaagggactaaaccattgctgaatcttccagttggttgatttccaccaccaaagtctttaccataaggtggaaagttg |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||||| ||||||||||| |||||||| |
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| T |
8945954 |
tatttttgtaccaatgatgtctgaagggactaaaccattgctaaaccttcctgttggttgatttccactaccaaagtctctaccataaggtagaaagttg |
8945855 |
T |
|
| Q |
140 |
cacttgaacacagcgttgatgatgtagttgttattgactgagtcaactattgagtcaccaaaggcaatgaatgctggaactgtttcattgtttggtagat |
239 |
Q |
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||||||| || || |||||||||||||| ||||||||||||| ||||| ||||| |||||| |||||||| |||||||||||||||||||| |
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| T |
8945854 |
cacttgacataag---tgccaatgtagttgttattacctgagtcaactatagagtctccaaacacaatgagtgctggaattgtttcattgtttggtagat |
8945758 |
T |
|
| Q |
240 |
tcacagcattaccataatgtagagagacaaggattatagcaagagagaaaagagtgacaagaggtgattgaaaaagaaggttttgaaagagcaacttcat |
339 |
Q |
| |
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|||||||||||||| |||||||||||| || |||| ||| ||||||||||||| | ||||||||||||||||||||||| |||||||| || || ||||| |
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| T |
8945757 |
tcacagcattaccacaatgtagagagataaagattgtagtaagagagaaaagattaacaagaggtgattgaaaaagaagattttgaaatagaaatttcat |
8945658 |
T |
|
| Q |
340 |
gtttttgtagaataatatgatgagct--tgactacaccttattggaacttcactttagcttagtgatataaaccttttataaacctt |
424 |
Q |
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|||||||||||||||||||| | ||| ||||||||| | |||||||||| | ||||| |||||| | ||| ||||||||| ||||| |
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| T |
8945657 |
gtttttgtagaataatatgaagggcttgtgactacacttgattggaactttattttagtttagtggtgtaagccttttatatacctt |
8945571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 682
Target Start/End: Complemental strand, 289029 - 288967
Alignment:
| Q |
621 |
tttctatctcttctattaaaaatgattttcttcgaaagttaatgaaaatagct-tttcatttt |
682 |
Q |
| |
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||||| ||||||||||||||||||| ||||||| |||| |||||||||||||| ||||||||| |
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| T |
289029 |
tttctctctcttctattaaaaatgaatttcttcaaaagctaatgaaaatagctatttcatttt |
288967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 236
Target Start/End: Original strand, 31797488 - 31797675
Alignment:
| Q |
43 |
ttttgtaccaatgatgtctgaagggactaaaccattgctgaatcttccagttggttgatttccaccaccaaagtctttaccataaggtggaaagttgcac |
142 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||||||| || ||||||| || ||| ||| |||| ||| ||||||| |||||||| | || |
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| T |
31797488 |
ttttgtaccaacaaggtctgatgggactaaaccattgctgaacctgccagttg---gaactcctccatcaaaatctctaccatatggtggaaaatcacat |
31797584 |
T |
|
| Q |
143 |
ttgaacacagcgttgatgatgtagttgttattgactgagtcaactattgagtcaccaaaggcaatgaatgctggaactgtttcattgtttggta |
236 |
Q |
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|||| | || || |||| ||||||||||| ||| |||||||| ||||||||||| ||| | |||||| ||||||||||||||||||| |
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| T |
31797585 |
ttgataagag---tgctgatatagttgttatttcctggatcaactatagagtcaccaaatacaaaaactgctggcactgtttcattgtttggta |
31797675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 676
Target Start/End: Complemental strand, 35439226 - 35439177
Alignment:
| Q |
627 |
tctcttctattaaaaatgattttcttcgaaagttaatgaaaatagctttt |
676 |
Q |
| |
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||||||||||||||| | ||||||||| ||||||||| ||||||| |||| |
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|
| T |
35439226 |
tctcttctattaaaactaattttcttcaaaagttaatcaaaatagatttt |
35439177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 658
Target Start/End: Complemental strand, 29531175 - 29531138
Alignment:
| Q |
621 |
tttctatctcttctattaaaaatgattttcttcgaaag |
658 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |||| |
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| T |
29531175 |
tttctctctcttctattaaaaatgattttcttcaaaag |
29531138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 692
Target Start/End: Original strand, 35386109 - 35386173
Alignment:
| Q |
627 |
tctcttctattaaaaatgattttcttcgaaagttaatgaaaatagcttttcatttttcagcataaa |
692 |
Q |
| |
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||||||||||||||||||||||||||| ||| |||| ||||||| | ||| ||||||||||||| |
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| T |
35386109 |
tctcttctattaaaaatgattttcttcaaaatctaatcaaaatag-tattccattttcagcataaa |
35386173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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