View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_47 (Length: 401)
Name: NF3820_high_47
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 46621568 - 46621184
Alignment:
| Q |
1 |
gtgtgaaactgtagcttctcatggtaaaaccaatcaacctgatatgtcttggatatcacaaaatagcagagtcaaatattcatcagccatggaaattaca |
100 |
Q |
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| T |
46621568 |
gtgtgaaactgtagcttctcatggtaaaaccaatcaacctgatatgtcttggatatcacaaaatagcagagtcaaatattcatcagccatggaaattaca |
46621469 |
T |
|
| Q |
101 |
tcctcatcactactttctttagttccaccaataataatgttgctactatgcaaaacacaagcactgctattgttttgctcaatgatctttgataaggcct |
200 |
Q |
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| T |
46621468 |
tcctcatcactactttctttagttccaccaataataatgttgctactatgcaaaacacaatcactgctattgttttgctcaatgatctttgataaggcct |
46621369 |
T |
|
| Q |
201 |
tactttgatccaatatagaattgaacatattaaatccactcattctaacaacagcattattcatcccaatggtattgagattctactaagatgaaatttt |
300 |
Q |
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| T |
46621368 |
tactttgatccaatatagaattgaacatattaaatccactcattctaacaacagcattattcatcccaatggtattgagattctactaagatgaaatttt |
46621269 |
T |
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| Q |
301 |
aggaaataaataacggccatggcactactaaatgttaagaatgtattgcacatcatgacaataatataaacatgaatcataatct |
385 |
Q |
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| T |
46621268 |
aggaaataaataacggccatggcagtactaaatgttaagaatgtattgcacatcatgacaataatataaacatgaatcataatct |
46621184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 46640252 - 46640142
Alignment:
| Q |
40 |
tgatatgtcttggatatcacaaaatagcagagtcaa--atattcatcagccatggaaattacatcctcatcactactttctttagttccaccaataataa |
137 |
Q |
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| T |
46640252 |
tgatatgtcttgg-tatcaccaaatagaagagacaacaatattcatcggctatggaaattacatcctcatcactactttctttagttccaccaataataa |
46640154 |
T |
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| Q |
138 |
tgttgctactat |
149 |
Q |
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|||||||||||| |
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| T |
46640153 |
tgttgctactat |
46640142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 363
Target Start/End: Complemental strand, 46640115 - 46640064
Alignment:
| Q |
312 |
aacggccatggcactactaaatgttaagaatgtattgcacatcatgacaata |
363 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||| |||| ||||| |
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| T |
46640115 |
aacggccatgacactactagatgttaagaatgtattgcacaccatggcaata |
46640064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 36991165 - 36991084
Alignment:
| Q |
169 |
attgttttgctcaatgatctttgataaggccttactttgatccaatatagaattgaacatattaaatccactcattctaaca |
250 |
Q |
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||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||| ||||||| || |||| |||||| |||| |
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| T |
36991165 |
attgttttgttcaatgatcttcgataaagccttactttgatccaatatagcattaaacatatcaactccattcattccaaca |
36991084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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