View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_49 (Length: 392)
Name: NF3820_high_49
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 4235611 - 4235341
Alignment:
| Q |
1 |
tgcaaggaatttggagaagaagaatgtgtttgaagggatatttaagagcaagttgtttttgggaattgttggtgtgacattggtgcttcaagttgtgatg |
100 |
Q |
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| T |
4235611 |
tgcaaggaaattggagaagaagaatgtgtttgaagggatatttaagagcaagttgtttttgggaattgttggtgtgacattggtgcttcaagttgtgatg |
4235512 |
T |
|
| Q |
101 |
gttgagtttttgaaaaagtttgctaatactgagaggttgaattggagagagtggattgtttgtattggttttgctgctgtttcttggccaattggatttg |
200 |
Q |
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| T |
4235511 |
gttgagtttttgaaaaagtttgctaatactgagaggttgaattggagagagtggattgtttgtattggttttgctgctgtttcttggccaattggatttg |
4235412 |
T |
|
| Q |
201 |
tggtgaagtttataccagtctcagataaaccattacttgattttttgaattttaggaagaaatattgaaga |
271 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||||||| |
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| T |
4235411 |
tggtgaagtttataccagtctcagacaaacctttacttgattttttgaattttaggaaaagatattgaaga |
4235341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 6184735 - 6184489
Alignment:
| Q |
1 |
tgcaaggaatttggagaagaagaatgtgtttgaagggatatttaagagcaagttgtttttgggaattgttggtgtgacattggtgcttcaagttgtgatg |
100 |
Q |
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||||||||| |||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6184735 |
tgcaaggaaattggagaaaaagaatgtctttgaaggaatattcaagagcaagttgtttttgggaattattggtgtgacattggtgcttcaagttgtgatg |
6184636 |
T |
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| Q |
101 |
gttgagtttttgaaaaagtttgctaatactgagaggttgaattggagagagtggattgtttgtattggttttgctgctgtttcttggccaattggatttg |
200 |
Q |
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| T |
6184635 |
gttgagtttttgaagaagtttgctggtacagaaaggttgaattggagagaatggattatttgtattggttttggtgctgtttcttggccaattggttttc |
6184536 |
T |
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| Q |
201 |
tggtgaagtttataccagtctcagataaaccattacttgattttttg |
247 |
Q |
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| |||||||| ||||| || |||||||||||| | |||||||||||| |
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| T |
6184535 |
ttgtgaagttgatacctgtttcagataaaccacttcttgattttttg |
6184489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 29475889 - 29475953
Alignment:
| Q |
1 |
tgcaaggaatttggagaagaagaatgtgtttgaagggatatttaagagcaagttgtttttgggaa |
65 |
Q |
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||||||||| |||||||| |||||||| ||||||||||||| ||| ||||||||||||| ||||| |
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| T |
29475889 |
tgcaaggaaattggagaaaaagaatgtttttgaagggatatgtaaaagcaagttgttttagggaa |
29475953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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