View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_high_50 (Length: 389)
Name: NF3820_high_50
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_50 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 23367470 - 23367114
Alignment:
| Q |
17 |
gacgcgaatatgaaaaactgcaaatattggaaaactgacgttacatataaaagaaaggaaaatgagaagatgccattcaaaattcaagacacaataaaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23367470 |
gacgcgaatatgaaaaactgcaaatattggaaaactgacgttacatataaaagaaaggaaaatgagaagatgccattcaaaattcaagacacaataaaac |
23367371 |
T |
|
| Q |
117 |
taacacatctcaagtaaataacggtagaattcaaaaccaaacaaaatataaagaactgaaaacttaaagttcttgtatcgttgtccattgcaaactttct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23367370 |
taacacatctcaagtaaataacggtagaattcaaaatcaaacaaaatataaaaaactgaaaacttaaagttcttgtatcgttgtccattgcaaactttct |
23367271 |
T |
|
| Q |
217 |
ctaataaacttaaaacaaacaacaaaatgcatacttttctcatttctcctccttaacttcagttaaaaggtgagctagaccatttgtaagtgcagatgtt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23367270 |
ctaataaacttaaaacaaacaacaaaatgcatacttttctcatttctcctccttaacttcagttaaaaggtgagctagaccatttgtaagtgcagatgtt |
23367171 |
T |
|
| Q |
317 |
gaagttaaagcagccttcaatatgttcagagactgcaacaagaagcaaggtaaatat |
373 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23367170 |
gaagttaaagcagccttcaatatgttgagagactgcaacaagaagcaaggtaaatat |
23367114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 229 - 358
Target Start/End: Complemental strand, 22626719 - 22626590
Alignment:
| Q |
229 |
aaacaaacaacaaaatgcatacttttctcatttctcctccttaacttcagttaaaaggtgagctagaccatttgtaagtgcagatgttgaagttaaagca |
328 |
Q |
| |
|
||||| |||||||| || | ||| || ||||||||||||||||||||||||||| | |||||| | ||||||||| || ||||||||||| || |||| | |
|
|
| T |
22626719 |
aaacacacaacaaagtgtaaactcttttcatttctcctccttaacttcagttaacatgtgagccaaaccatttgttagggcagatgttgatgtcaaagaa |
22626620 |
T |
|
| Q |
329 |
gccttcaatatgttcagagactgcaacaag |
358 |
Q |
| |
|
|||||||||||| | ||| |||||| |||| |
|
|
| T |
22626619 |
gccttcaatatgctaagacactgcagcaag |
22626590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 340
Target Start/End: Original strand, 23326045 - 23326127
Alignment:
| Q |
258 |
atttctcctccttaacttcagttaaaaggtgagctagaccatttgtaagtgcagatgttgaagttaaagcagccttcaatatg |
340 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||| || |||||||| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
23326045 |
atttctcctccttaacttcggttaacagatgagcaagtccatttgttagagcagatgttgaagtcaaagcagccttcaatatg |
23326127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 353
Target Start/End: Original strand, 22632529 - 22632626
Alignment:
| Q |
256 |
tcatttctcctccttaacttcagttaaaaggtgagctagaccatttgtaagtgcagatgttgaagttaaagcagccttcaatatgttcagagactgca |
353 |
Q |
| |
|
||||||||||||||||||||||||| | | |||||| | ||||||||| || ||||| |||||||| |||||||||||||||||| | ||| |||||| |
|
|
| T |
22632529 |
tcatttctcctccttaacttcagttcacatgtgagccaaaccatttgttagagcagaagttgaagtcaaagcagccttcaatatgctaagacactgca |
22632626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 339
Target Start/End: Original strand, 23334747 - 23334825
Alignment:
| Q |
261 |
tctcctccttaacttcagttaaaaggtgagctagaccatttgtaagtgcagatgttgaagttaaagcagccttcaatat |
339 |
Q |
| |
|
||||||| ||||||||||||| | |||||| ||||||||||| || |||||||||||||| ||||| ||| ||||||| |
|
|
| T |
23334747 |
tctcctctttaacttcagttatgaagtgagcaagaccatttgttagagcagatgttgaagtcaaagctgccctcaatat |
23334825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 23249892 - 23249942
Alignment:
| Q |
253 |
ttctcatttctcctccttaacttcagttaaaaggtgagctagaccatttgt |
303 |
Q |
| |
|
||||||||| ||| |||||||||||||||| | ||||||||||||||||| |
|
|
| T |
23249892 |
ttctcatttttccaccttaacttcagttaacaactgagctagaccatttgt |
23249942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 23321525 - 23321571
Alignment:
| Q |
293 |
agaccatttgtaagtgcagatgttgaagttaaagcagccttcaatat |
339 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||| |||||||| |
|
|
| T |
23321525 |
agaccatttgttagagcagatgttgaggttaaagcagctttcaatat |
23321571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 354
Target Start/End: Original strand, 23341246 - 23341335
Alignment:
| Q |
265 |
ctccttaacttcagttaaaaggtgagctagaccatttgtaagtgcagatgttgaagttaaagcagccttcaatatgttcagagactgcaa |
354 |
Q |
| |
|
|||||||||||||| || | |||||| ||||| |||| || |||||||| || |||||||| |||||||||||| | ||| ||||||| |
|
|
| T |
23341246 |
ctccttaacttcagctagcaagtgagcaagaccgtttgatagagcagatgtggatgttaaagctgccttcaatatgctgagacactgcaa |
23341335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University