View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_high_51 (Length: 389)
Name: NF3820_high_51
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_51 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 9 - 374
Target Start/End: Original strand, 30956037 - 30956398
Alignment:
| Q |
9 |
agcaaaggaaacattgaaatatgtaaaaacttctgggttataataatataaaaccctagctagtagtatataagggacagagtgtatacatataaccctc |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
30956037 |
agcaaaagaaacattgaaatatgtaaaaacttctgggttataataatataaaaccctagctagtagtatataaggggcagggtgtatacatataaccctc |
30956136 |
T |
|
| Q |
109 |
cttagttgaaaaagctcccacagcatagaaatcttaattacttctcaatatatacaattgcatgccatcagaaataatacataaaacatgcaatnnnnnn |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30956137 |
cttagttgaaaaagctcccacagcatagaaatcttaattacttctcaatatatacaattgcatgccatcagaaataatacataaaacatgcaattatata |
30956236 |
T |
|
| Q |
209 |
nnnnnncacaaaggtagagaaataagtgcaatatatattaattctttcttgctatggataatgaccaagtctaagctccaaatccaattcacccacttca |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30956237 |
tatatacacaaaggtagagaaataagtgcaatatatattaa----ttcttgctatggataatgaccaagtctaagctccaaatccaattcacccacttca |
30956332 |
T |
|
| Q |
309 |
ttgttgttttctatcttgtctttatttaatggatttgtatacaagctcaaacccctccaatcttgt |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30956333 |
ttgttgttttctatcttgtctttatttaatggatttgtatacaagctcaaacccctccaatcttgt |
30956398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University