View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_52 (Length: 388)
Name: NF3820_high_52
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 42974659 - 42975037
Alignment:
| Q |
1 |
attactgactcccttatttctctggttaacaatttgagccaactgaagaacataatgccctgaagaaatcatttaaatctataagaaatttaacaattct |
100 |
Q |
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| T |
42974659 |
attactgactcccttatttctctggttaacaatttgagccaactgaagaacataatgccctgaagaaatcatttaaatctataagaaatttaacaattct |
42974758 |
T |
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| Q |
101 |
tcattgtacaagccattccattgataagtagaaaactgatatttcaaatatagattcacctgcataactttccccagccatgtagaattctctatgtttg |
200 |
Q |
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| T |
42974759 |
tcattgtacaagccattccattgataagtagaaaactgatatttcaaatatagattcacctgcataactttccccagccatgtagaattctctatgtttg |
42974858 |
T |
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| Q |
201 |
tactgaggaaatctttcaaaccaattaactagaaaaatatatgcatcctcagctgcaaagtcnnnnnnngttacagatcgcagatacatattaacacgtc |
300 |
Q |
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| T |
42974859 |
tactgaggaaatctttcaaaccaattaactagaaaaatatatgcatcctcagctgcaaagtcaaaaaaagttacagatcgcagatacatattaacacgtc |
42974958 |
T |
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| Q |
301 |
aaatctcattgctaaaacaaaacaaatctggcactgcgagtaaatccttcatgggcaaaaccattttacaaacctatgc |
379 |
Q |
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| T |
42974959 |
aaatctcattgctaaaacaaaacaaatctggcactgcgagtaaatccttcatgggcaaaaccattttacaaacctatgc |
42975037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 144 - 379
Target Start/End: Original strand, 42981268 - 42981493
Alignment:
| Q |
144 |
tcaaatatagattcacctgcataactttccccagccatgtagaattctctatgtttgtactgaggaaatctttcaaaccaattaactagaaaaatatatg |
243 |
Q |
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| T |
42981268 |
tcaaataaagatttacctgcataactttccccagcgatgtagaattctctatgcttatattgaggaaatctttcaaaccaattaactagaaagatatatg |
42981367 |
T |
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| Q |
244 |
catcctcagctgcaaagtcnnnnnnngttacagatcgcagatacatattaacacgtcaaatctcattgctaaaacaaaacaaatctggcactgcgagtaa |
343 |
Q |
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||||||||||||||||||| |||||| |||||||| | ||||| ||||||||||||||||||||||||| |||||||| |||||| |
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| T |
42981368 |
catcctcagctgcaaagtcaagaaac---tcagatctcagatacaaactaacatgtcaaatctcattgctaaaacaaaa-----ctggcactaggagtaa |
42981459 |
T |
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| Q |
344 |
atccttcatgggcaaaaccattttacaaacctatgc |
379 |
Q |
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|||||||||| |||| |||| |||||||||||||| |
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| T |
42981460 |
atccttcatgagcaagacca--ttacaaacctatgc |
42981493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 42981100 - 42981156
Alignment:
| Q |
1 |
attactgactcccttatttctctggttaacaatttgagccaactgaagaacataatg |
57 |
Q |
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|||| ||| ||| ||||||||||||| ||||||||||||||| ||| |||||||||| |
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| T |
42981100 |
attattgattcctttatttctctggtaaacaatttgagccaattgaggaacataatg |
42981156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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