View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_57 (Length: 377)
Name: NF3820_high_57
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_57 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 9574495 - 9574150
Alignment:
| Q |
17 |
aattattgagtatatattggtgataatttgatctcttattatgcaaaaatacattatgccttgcctcgattaagtgcagagtaccgaggagtagctaatg |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9574495 |
aattattgagtatatattggtgataacttgatctcttattatgcaaaaatacattatgccttgcctcgattaagtgcagagtatcgaggagtagctaatg |
9574396 |
T |
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| Q |
117 |
ttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtccggttacaaaagctactttggtatattgtgttaatgttgctgcaatgta |
216 |
Q |
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| T |
9574395 |
ttctgtctaaatcttgcttgattagaaacttacttttagaactacattgtccagttacaaaagctactttggtatattgtgttaatgttgctgcaatgta |
9574296 |
T |
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| Q |
217 |
tctatccgacaattcagttcaacaataacacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtcaagtgccagtctta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
9574295 |
tctatccgacaattcagttcaacaataacacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcatggtcaagtgcgagtctta |
9574196 |
T |
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| Q |
317 |
catgttccctatcattatcgatttgctattatcttcacaaagggac |
362 |
Q |
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| T |
9574195 |
catgttccctatcattatcgatttgctaacatcttcacaaagggac |
9574150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 241 - 358
Target Start/End: Complemental strand, 9565406 - 9565289
Alignment:
| Q |
241 |
ataacacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtcaagtgccagtcttacatgttccctatcattatcgattt |
340 |
Q |
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| T |
9565406 |
ataacacaccaaacacattgatatgaacatacacttcttgggcgaaaaagtttctcccagtcaagtgcgagtctaacatgtttcatgtccttatcgattt |
9565307 |
T |
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| Q |
341 |
gctattatcttcacaaag |
358 |
Q |
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|||| |||||||||||| |
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| T |
9565306 |
gctaacatcttcacaaag |
9565289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 10533587 - 10533485
Alignment:
| Q |
95 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtccggttacaaaagctactttggtatatt |
194 |
Q |
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|||||||| ||||| || ||||| || ||| ||||||| | ||||||||||||||| || ||||||||||| || || |||| ||| |||||||| |||| |
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| T |
10533587 |
gagtaccgcggagtcgccaatgtagtatctgaatcttgttggattagaaacttactgttggaactacattgcccagtcacaacagccactttggtttatt |
10533488 |
T |
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| Q |
195 |
gtg |
197 |
Q |
| |
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||| |
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| T |
10533487 |
gtg |
10533485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 8045214 - 8045304
Alignment:
| Q |
213 |
tgtatctatccgacaattcagttcaacaataacacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtca |
303 |
Q |
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||||||||||||||||| |||||||||| ||| ||||||| |||| ||||| |||||||||| || | ||||||||| ||| |||||| |
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| T |
8045214 |
tgtatctatccgacaatccagttcaacatcaacgcaccaaacacatcgaaattgatatacactttgtgcgggaaaaagttactcgcggtca |
8045304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 22949570 - 22949640
Alignment:
| Q |
95 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattg |
165 |
Q |
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| T |
22949570 |
gagtaccgcggagtcgccaatgtagtatctgaatcttgttggattagaaacttactgttggaactacattg |
22949640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 273
Target Start/End: Complemental strand, 25624025 - 25623847
Alignment:
| Q |
95 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtccggttacaaaagctactttggtatatt |
194 |
Q |
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|||||||| ||||| | ||||| || ||| ||||||| | ||||||||||||||| || ||||||||||| || || |||| | |||||||||| |||| |
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| T |
25624025 |
gagtaccgcggagtcaccaatgtagtatctgaatcttgttggattagaaacttactgttggaactacattgcccagtcacaacatctactttggtttatt |
25623926 |
T |
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| Q |
195 |
gtgttaatgttgctgcaatgtatctatccgacaattcagttcaacaataacacaccaaatacattgaaatgaatataca |
273 |
Q |
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||| |||||| ||| | ||| |||||| ||| |||| ||||| ||| ||||||| |||| || ||||||||||| |
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| T |
25623925 |
gtgataatgtgagtgctgtctatttatccggcaacccagtccaacatcaacgcaccaaacacatcgagatgaatataca |
25623847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 5417139 - 5417079
Alignment:
| Q |
108 |
tagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtcc |
168 |
Q |
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|||||||||| |||| | |||| || | ||||||||||| ||||| ||||||||||||||| |
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| T |
5417139 |
tagctaatgtagtgtttgaatcatgttggattagaaactaactttcagaactacattgtcc |
5417079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 91801 - 91903
Alignment:
| Q |
95 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtccggttacaaaagctactttggtatatt |
194 |
Q |
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|||||||| ||||| || ||||| || ||| ||||||| | ||||||||||||||| || ||||||||||| || || |||| ||| ||| |||| |||| |
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| T |
91801 |
gagtaccgcggagtcgccaatgtagtatctgaatcttgttggattagaaacttactgttggaactacattgcccagtcacaacagccactctggtttatt |
91900 |
T |
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| Q |
195 |
gtg |
197 |
Q |
| |
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||| |
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| T |
91901 |
gtg |
91903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 47249677 - 47249575
Alignment:
| Q |
95 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattgtccggttacaaaagctactttggtatatt |
194 |
Q |
| |
|
|||||||| ||||| || ||||| || ||| ||||||| | ||||||||||||||| || ||||||||||| || || |||| | ||||| |||| |||| |
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| T |
47249677 |
gagtaccgcggagtcgccaatgtagtatctgaatcttgttggattagaaacttactgttggaactacattgcccagtcacaacatctactatggtttatt |
47249578 |
T |
|
| Q |
195 |
gtg |
197 |
Q |
| |
|
||| |
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|
| T |
47249577 |
gtg |
47249575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 42336435 - 42336483
Alignment:
| Q |
136 |
gattagaaacttacttttagaactacattgtccggttacaaaagctact |
184 |
Q |
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|||||||| ||||||||||||| |||||||| | ||||||||||||||| |
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| T |
42336435 |
gattagaatcttacttttagaaatacattgttctgttacaaaagctact |
42336483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 3955185 - 3955255
Alignment:
| Q |
95 |
gagtaccgaggagtagctaatgttgtgtctaaatcttgcttgattagaaacttacttttagaactacattg |
165 |
Q |
| |
|
||||||| ||||| || ||||| || ||||||||||| | ||||||||||||||| || ||||||||||| |
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| T |
3955185 |
gagtaccacggagtcgccaatgtagtatctaaatcttgttggattagaaacttactgttggaactacattg |
3955255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 324
Target Start/End: Complemental strand, 28495288 - 28495210
Alignment:
| Q |
246 |
acaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtcaagtgccagtcttacatgttcc |
324 |
Q |
| |
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|||||||| ||||||||||| |||||||||| |||| ||| ||||| ||| |||||| |||| || ||||||||||| |
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| T |
28495288 |
acaccaaacacattgaaatggatatacactttgtgtgggaagaagttgctcgcggtcaggtgcatgtattacatgttcc |
28495210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 324
Target Start/End: Complemental strand, 29807697 - 29807619
Alignment:
| Q |
246 |
acaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtcaagtgccagtcttacatgttcc |
324 |
Q |
| |
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|||||||| ||||||||||| |||||||||| |||| ||| ||||| ||| |||||| |||| || ||||||||||| |
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| T |
29807697 |
acaccaaacacattgaaatggatatacactttgtgtgggaagaagttgctcgcggtcaggtgcatgtattacatgttcc |
29807619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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