View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3820_high_59 (Length: 376)
Name: NF3820_high_59
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_59 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 357
Target Start/End: Complemental strand, 13797278 - 13796937
Alignment:
| Q |
16 |
aaaacatggatttctaaagcttttataccgtgattatggtaaaaccaaatttaagttaaattttgtaaactgaattgaatttatgggttgctagctatgt |
115 |
Q |
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| T |
13797278 |
aaaacatggatttctaaagcttttatacagtgatcttggtaaaaccaaatttaagttaaattttgtaaattgaattgaatttatgggttgctagctatgt |
13797179 |
T |
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| Q |
116 |
actacatgcatcaccagcaagataggttttaaaacacggtctacaatcacgaatttgtcctcgacatcaagctttttgtaacatttgtgactgcaacttg |
215 |
Q |
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| T |
13797178 |
actacatgcatcaccagcaagataggttttaaaacacggtctacaatcacgattttgtcctcgacatcaagctttttgtaacatttgtgactgcaacttg |
13797079 |
T |
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| Q |
216 |
acctcgattacgattgtatgtatcaactgcatttgactgcgatccacaatattaagatcgcaacactattgtcgcaatgattggttgttgagtagttgaa |
315 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13797078 |
acctcgattatgattgtatgtatcaactgcatttgactgcgatccacaatattaagatcgcaacactattgtcgcaatgattagttgttgagtagttgaa |
13796979 |
T |
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| Q |
316 |
tttgatgtcaaattagtcctttctaagaaatgaattgagatt |
357 |
Q |
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| T |
13796978 |
tttgatgtcagattagtcctttctaagaaatgaattgagatt |
13796937 |
T |
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