View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3820_high_60 (Length: 372)
Name: NF3820_high_60
Description: NF3820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3820_high_60 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 30791037 - 30790692
Alignment:
| Q |
18 |
attatgaggactgacttcacttataaactgattatttccatgttttatctcgtctaatggggaactcttaacacaccccttcacacccaaattgagtatc |
117 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30791037 |
attatgaggactgattccacttataaactgattatttccatgttttatctcgtctaatgtggaactcttaacacaccccttcacacccaaattgagtatc |
30790938 |
T |
|
| Q |
118 |
tggaatgtgactcaagtgacccgataacgttaatttgatagcaaatggcccaatgaatattgaataggctatgatatcatcttaaattttagatttggcc |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30790937 |
tggaatgtgactcaagtgacccaataacggtaatttgatagcaaatggtccaataaatattgaataggctatgatatcatcttagattttagatttggcc |
30790838 |
T |
|
| Q |
218 |
taactcaacctttatcggtttagaaggtgagaattgtcttgccttactaataaatacattttcagaccaatgtgggacacttaaccattatcattttcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30790837 |
taactcaacctttatcggtttagaaggtgagaattgtcttgccttactaataaatacattttcagaccaatgtgggacacataaccattatcattttcat |
30790738 |
T |
|
| Q |
318 |
acggctgatccgatcaaattatagcagtttcaatttgaagaataat |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30790737 |
acggctgatccgatcaaattatagcagtttcaatttgaagaataat |
30790692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 14596162 - 14596210
Alignment:
| Q |
181 |
ataggctatgatatcatcttaaattttagatttggcctaactcaacctt |
229 |
Q |
| |
|
||||||| | ||||||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
14596162 |
ataggctctaatatcatcttaaaattttgattgggcctaactcaacctt |
14596210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 16015690 - 16015738
Alignment:
| Q |
181 |
ataggctatgatatcatcttaaattttagatttggcctaactcaacctt |
229 |
Q |
| |
|
||||||| | ||||||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
16015690 |
ataggctctaatatcatcttaaaattttgattgggcctaactcaacctt |
16015738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University